Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-bw-c-01-0-UNL.s1.3

Sequence:


               
               GAGCCTGGCTGCAGCACTGCCAGCGAGCCCAGGCCACCATCCAAAGCTCCCCAGGGGTCC
CAGGCCCTCCGACCCTCCCAGGGCAGCAAGTCCTCCAGCCTGGATGCCCTGGGTCCAGCC
CGGAAGGAAGAGGAAGCGTCCTTCTGGAAGATCAACGCGGAGCGGTCTCGTGGGGAGGGC
CCTGAGGCTGACTTCCAGTCGCTGACCCCCAGCCAGATCAAGTCCATCGAGAAGGGGGAG
AAGGTCCTGCCTGCTTGTTACCGACAGGAGCCCGCCCTGAAGGCCAGGGAGGCCAAGGAG
GAAAAATCCAGCAGCCTCCGCCAGGAGCAGTGGGTCCTTCCCAGCCTCAGCATGGAGCGC
GAGAGGCCCCAGCCCGCCCAGGCCTGCACCAGCCCTCCCAGCGAGGCCGAGCCCGGGGGA
AAGCTGCCTTCTGCCTCCGCCGGCCCGGAGGCCTTGGAGGACGCAGAGGACACACTGTTC
TCGGAACCTGTGCCTGTTCAGGTCAGCTCAAGTAATGTCATCTTGAAGACGGGATTTGAT
TTTCTGGACAACTGGTAAAATGTGTTCGACAAAACAAACAAAGCAAGAACCCCCAAACGT
TTTCCAAAGTGGGGTGGCAAAGGAGGAGAAAGAGGGCAGCGTTCCCCTGCGGCTTTTCCT
GGTTTCTCTGCACTCTTTTCTTACTCATTGGGAAACTGGTAAATATTGCCTCGTCCGGGT
TTCCAGATTTTTTCCCTTTTTGGTAAGACCAGATATCTGTGCTCTTTTCAATGATTTGAT
AACAGAAGTTTTACACTTGGAATTTTTAATTCCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCCTGGCTGCAGCACTGCCAGCGAGCCCAGGCCACCATCCAAAGCTCCCCAGGGGTCC
CAGGCCCTCCGACCCTCCCAGGGCAGCAAGTCCTCCAGCCTGGATGCCCTGGGTCCAGCC
CGGAAGGAAGAGGAAGCGTCCTTCTGGAAGATCAACGCGGAGCGGTCTCGTGGGGAGGGC
CCTGAGGCTGACTTCCAGTCGCTGACCCCCAGCCAGATCAAGTCCATCGAGAAGGGGGAG
AAGGTCCTGCCTGCTTGTTACCGACAGGAGCCCGCCCTGAAGGCCAGGGAGGCCAAGGAG
GAAAAATCCAGCAGCCTCCGCCAGGAGCAGTGGGTCCTTCCCAGCCTCAGCATGGAGCGC
GAGAGGCCCCAGCCCGCCCAGGCCTGCACCAGCCCTCCCAGCGAGGCCGAGCCCGGGGGA
AAGCTGCCTTCTGCCTCCGCCGGCCCGGAGGCCTTGGAGGACGCAGAGGACACACTGTTC
TCGGAACCTGTGCCTGTTCAGGTCAGCTCAAGTAATGTCATCTTGAAGACGGGATTTGAT
TTTCTGGACAACTGGTAAAATGTGTTCGACAAAACAAACAAAGCAAGAACCCCCAAACGT
TTTCCAAAGTGGGGTGGCAAAGGAGGAGAAAGAGGGCAGCGTTCCCCTGCGGCTTTTCCT
GGTTTCTCTGCACTCTTTTCTTACTCATTGGGAAACTGGTAAATATTGCCTCGTCCGGGT
TTCCAGATTTTTTCCCTTTTTGGTAAGACCAGATATCTGTGCTCTTTTCAATGATTTGAT
AACAGAAGTTTTACACTTGGAATTTTTAATTCCTCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61555338|gb|AAX46698.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61555338|gb|AAX46698.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               238-357, - strand, RNAz p=0.780273
               

               
               671-760, + strand, RNAz p=0.988836

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               238-357, - strand, RNAz p=0.780273
               

               
               671-760, + strand, RNAz p=0.988836

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-503, gnl|bosTau2|chr28 (1226994-1226486)
               

               
               1-503, gnl|Hg17|chr1 (227286338-227285833)
               

               
               1-503, gnl|Mm7|chr8 (123226723-123226236)
               


               
               671-809, gnl|bosTau2|chr28 (1223836-1223702)
               

               
               671-809, gnl|Hg17|chr1 (227282249-227282100)
               

               
               671-809, gnl|Mm7|chr8 (123224980-123224831)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-503, gnl|bosTau2|chr28 (1226994-1226486)
               

               
               1-503, gnl|Hg17|chr1 (227286338-227285833)
               

               
               1-503, gnl|Mm7|chr8 (123226723-123226236)
               


               
               671-809, gnl|bosTau2|chr28 (1223836-1223702)
               

               
               671-809, gnl|Hg17|chr1 (227282249-227282100)
               

               
               671-809, gnl|Mm7|chr8 (123224980-123224831)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	238-357, - strand, RNAz p=0.780273
	671-760, + strand, RNAz p=0.988836

	1-503, gnl\|bosTau2\|chr28 (1226994-1226486)
	1-503, gnl\|Hg17\|chr1 (227286338-227285833)
	1-503, gnl\|Mm7\|chr8 (123226723-123226236)

	671-809, gnl\|bosTau2\|chr28 (1223836-1223702)
	671-809, gnl\|Hg17\|chr1 (227282249-227282100)
	671-809, gnl\|Mm7\|chr8 (123224980-123224831)