Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-cb-a-12-0-UNL.s1.3

Sequence:


               
               TTGGGGAAAAGTTATTTGTCATAGAATTAAATTCATCTTAAGACTTTAGTGAATTGCTTT
CTATGTGCAGAACTTAGAAAATACTAAAAAAATATATAGTATTTTATGGAGAAGACAACT
TCAGCCTACTACAGTATTTCAGGTCAGCACACTTGCTATGTTTGCACAGGTTCCTGGAAC
CCTGCCCTGGGTCTGTGGGGGGCGGGAGGATGTTCACTGGGAATGGCTCATAGTACCAGT
TTTTTTGCGGTACTAGGTCACTAAGCGCACAAGTCTAAGTACTCTTTTTTGTTATAATGG
AAGTTCAGGAGTAGCCAGCTCCTACCTAGACTTGAGCTTTTCTGTGCATTAGCAGTTAGC
ATCTAAACCCTTAATTTTACTGATGGGGAAGCAGACCCTGAGGACAATGAAAAAGATCAT
TGATGTTCACACTACCCGGGACTTGCAGGATGGTCACCCACAGTAAAAGTTGGAAGCCCA
GGTAGGCTTGAGCCTCCCAAAGAAGCACTTTCCAGCCCAGTGATGATGGGGTGGAGACCC
TTTTGAGCTCAGCAAGTTAGAGATGAAAAATGGCAACCAGCCTCACAGAGGTTTGTGTAC
TTCCGATAGAAATCATGATCATTGGTGTGTTTTGTCCAGGGAAACAAAGAATACAGTAAA
TAGAGTAAGATGTTTTGGGGAGGGAACTGGGTGCCTCTCCTGCCACCTAGGCCTGAAGCA
CCAGGAGGGGCCCCAGAGGAAGACAGAGCCCCCACTCCCCTGGGCAACAAAGTGTGGACC
TGCAGCTCTACACCACTGAGTTTAAGATACTAGAATGGATGTGTTCCATTGCTTTGTTTT
ATTTCACACAAGGGTATTGTTTTTAAAGCATTCATCTTTAAAGGTATAGCATCACGTAAA
AAATAGTATCTCTAACAACACAGGAGTATTTTAACCCAAACTAGTTTCTTCCACATAATG
CTGTCTAAGCTGCCTTTAACACAGTAGCATAGAACTAACTGCCAGGAGTGCACTGAGGAA
TAAGGACCTGAGGTACTGTCATCCTCAGGTAGGTTACGATAATGGGAGGGGGTGCTGTTA
TGGAATTTGAGGGTCTCTTCTCTGGGTTTCACACTGATGGCCCTCGGACCTATCTCAGCT
CCCAGGAATGGCTGCAGCAGGTAGCTTAGGGGGAGTGCCTTTTCCTAATCGCTAAGCGGA
GGCTAAATGCAGCACAGCTTTCAGGATGATCTATTTTTAAAATACCCTGAAGCAGACTAT
AGAAAGAAAGTTGATTTGAATTGCAAACATAAACCTTTGTTATCTGCCAAATGAATTAGT
GATTGTCTAATGATTGTCACAAACTGGTATGGAGGTGATAGCCTTGCCAACAAGGACTTC
TCATTTCTAACATAGCTGATTTTATGTTAGATGTACTTGGTAATGGTGTTTGTATAAGTG
ATTTATTGGTGAGAACTTGGTCCAGGTGACAGCCTACTGTTTTGAAGGCAAGACAGATGG
ATAATGGGGGGAGTCTATTATGTGTGTCTAAGTGGCCTTAGTTTAATGTCACTCTCCTAG
CTTGTGACCTTGGAAATGATTGCTAATGTGAGTAAGTTGTTGAGACCATGACCCACCTAC
AGTGAAAAAAAAATCTTAGATCTTCATTTTTATCTCCATGTTGAATGCGTATCTTCAAGA
TGTAGCCTGCCAAGAGTGTTTACCAACTTGGAGTCATGAGCTGTCATTGGTTACTAAGTC
TCTGGAATACCCAGGAGCAAGGCATGCCCTTGACACTGTGATAGGTCACCCCACAGCATC
ATGTCCTTTAAAACCAGTTACTCTGGAGACAGGAGTAGTCAACTGTGTGGTGGGATAGAG
TGAGGATACAACCAGTCTTTTCACATTTATTGTTGTGTAGACAAAACAGTGTTAATGGAA
TGTTTTTCACCTTCACACTGGTTGTTTTGATGTTGTTTGCTTAAAATGTATATTTAGAAT
GGAATCATCTAAAAAAGCTGATCTTGCTAATAACCTCCTGTTCCCTGCAAAGGGAAATGT
CATAAGAATGTGTAAAAATAAAAATCTATGGGAAAAAAAAAAAAAAAAGTTCCTAAAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGGGGAAAAGTTATTTGTCATAGAATTAAATTCATCTTAAGACTTTAGTGAATTGCTTT
CTATGTGCAGAACTTAGAAAATACTAAAAAAATATATAGTATTTTATGGAGAAGACAACT
TCAGCCTACTACAGTATTTCAGGTCAGCACACTTGCTATGTTTGCACAGGTTCCTGGAAC
CCTGCCCTGGGTCTGTGGGGGGCGGGAGGATGTTCACTGGGAATGGCTCATAGTACCAGT
TTTTTTGCGGTACTAGGTCACTAAGCGCACAAGTCTAAGTACTCTTTTTTGTTATAATGG
AAGTTCAGGAGTAGCCAGCTCCTACCTAGACTTGAGCTTTTCTGTGCATTAGCAGTTAGC
ATCTAAACCCTTAATTTTACTGATGGGGAAGCAGACCCTGAGGACAATGAAAAAGATCAT
TGATGTTCACACTACCCGGGACTTGCAGGATGGTCACCCACAGTAAAAGTTGGAAGCCCA
GGTAGGCTTGAGCCTCCCAAAGAAGCACTTTCCAGCCCAGTGATGATGGGGTGGAGACCC
TTTTGAGCTCAGCAAGTTAGAGATGAAAAATGGCAACCAGCCTCACAGAGGTTTGTGTAC
TTCCGATAGAAATCATGATCATTGGTGTGTTTTGTCCAGGGAAACAAAGAATACAGTAAA
TAGAGTAAGATGTTTTGGGGAGGGAACTGGGTGCCTCTCCTGCCACCTAGGCCTGAAGCA
CCAGGAGGGGCCCCAGAGGAAGACAGAGCCCCCACTCCCCTGGGCAACAAAGTGTGGACC
TGCAGCTCTACACCACTGAGTTTAAGATACTAGAATGGATGTGTTCCATTGCTTTGTTTT
ATTTCACACAAGGGTATTGTTTTTAAAGCATTCATCTTTAAAGGTATAGCATCACGTAAA
AAATAGTATCTCTAACAACACAGGAGTATTTTAACCCAAACTAGTTTCTTCCACATAATG
CTGTCTAAGCTGCCTTTAACACAGTAGCATAGAACTAACTGCCAGGAGTGCACTGAGGAA
TAAGGACCTGAGGTACTGTCATCCTCAGGTAGGTTACGATAATGGGAGGGGGTGCTGTTA
TGGAATTTGAGGGTCTCTTCTCTGGGTTTCACACTGATGGCCCTCGGACCTATCTCAGCT
CCCAGGAATGGCTGCAGCAGGTAGCTTAGGGGGAGTGCCTTTTCCTAATCGCTAAGCGGA
GGCTAAATGCAGCACAGCTTTCAGGATGATCTATTTTTAAAATACCCTGAAGCAGACTAT
AGAAAGAAAGTTGATTTGAATTGCAAACATAAACCTTTGTTATCTGCCAAATGAATTAGT
GATTGTCTAATGATTGTCACAAACTGGTATGGAGGTGATAGCCTTGCCAACAAGGACTTC
TCATTTCTAACATAGCTGATTTTATGTTAGATGTACTTGGTAATGGTGTTTGTATAAGTG
ATTTATTGGTGAGAACTTGGTCCAGGTGACAGCCTACTGTTTTGAAGGCAAGACAGATGG
ATAATGGGGGGAGTCTATTATGTGTGTCTAAGTGGCCTTAGTTTAATGTCACTCTCCTAG
CTTGTGACCTTGGAAATGATTGCTAATGTGAGTAAGTTGTTGAGACCATGACCCACCTAC
AGTGAAAAAAAAATCTTAGATCTTCATTTTTATCTCCATGTTGAATGCGTATCTTCAAGA
TGTAGCCTGCCAAGAGTGTTTACCAACTTGGAGTCATGAGCTGTCATTGGTTACTAAGTC
TCTGGAATACCCAGGAGCAAGGCATGCCCTTGACACTGTGATAGGTCACCCCACAGCATC
ATGTCCTTTAAAACCAGTTACTCTGGAGACAGGAGTAGTCAACTGTGTGGTGGGATAGAG
TGAGGATACAACCAGTCTTTTCACATTTATTGTTGTGTAGACAAAACAGTGTTAATGGAA
TGTTTTTCACCTTCACACTGGTTGTTTTGATGTTGTTTGCTTAAAATGTATATTTAGAAT
GGAATCATCTAAAAAAGCTGATCTTGCTAATAACCTCCTGTTCCCTGCAAAGGGAAATGT
CATAAGAATGTGTAAAAATAAAAATCTATGGGAAAAAAAAAAAAAAAAGTTCCTAAAGAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               646-761, - strand, RNAz p=0.984065
               

               
               1026-1135, - strand, RNAz p=0.923921

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               646-761, - strand, RNAz p=0.984065
               

               
               1026-1135, - strand, RNAz p=0.923921

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-2100, gnl|bosTau2|chr21 (2338616-2340690)
               

               
               1-2100, gnl|Hg17|chr15 (97491321-97493337)
               

               
               1-2100, gnl|Mm7|chr7 (63588657-63586634)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-2100, gnl|bosTau2|chr21 (2338616-2340690)
               

               
               1-2100, gnl|Hg17|chr15 (97491321-97493337)
               

               
               1-2100, gnl|Mm7|chr7 (63588657-63586634)

Expressed library(ies): 37 entry(ies)

More info

Expressed library(ies): 37 entry(ies)

Help | Less info


               
               bla (2.1139)
               

               
               ldo (1.45504)
               

               
               tbr (1.3876)
               

               
               ssp (1.08416)
               

               
               ste (0.946458)
               

               
               gul (0.887942)
               

               
               aor (0.781097)
               

               
               isp (0.75188)
               

               
               vin (0.665115)
               

               
               lin (0.582411)
               

               
               sto (0.539471)
               

               
               ton (0.526501)
               

               
               mas (0.42061)
               

               
               ret (0.3862)
               

               
               fhi (0.339155)
               

               
               nje (0.33184)
               

               
               ski (0.29347)
               

               
               spl (0.286369)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 37 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (2.1139)
               

               
               ldo (1.45504)
               

               
               tbr (1.3876)
               

               
               ssp (1.08416)
               

               
               ste (0.946458)
               

               
               gul (0.887942)
               

               
               aor (0.781097)
               

               
               isp (0.75188)
               

               
               vin (0.665115)
               

               
               lin (0.582411)
               

               
               sto (0.539471)
               

               
               ton (0.526501)
               

               
               mas (0.42061)
               

               
               ret (0.3862)
               

               
               fhi (0.339155)
               

               
               nje (0.33184)
               

               
               ski (0.29347)
               

               
               spl (0.286369)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	646-761, - strand, RNAz p=0.984065
	1026-1135, - strand, RNAz p=0.923921

	1-2100, gnl\|bosTau2\|chr21 (2338616-2340690)
	1-2100, gnl\|Hg17\|chr15 (97491321-97493337)
	1-2100, gnl\|Mm7\|chr7 (63588657-63586634)

	bla (2.1139)
	ldo (1.45504)
	tbr (1.3876)
	ssp (1.08416)
	ste (0.946458)
	gul (0.887942)
	aor (0.781097)
	isp (0.75188)
	vin (0.665115)
	lin (0.582411)
	sto (0.539471)
	ton (0.526501)
	mas (0.42061)
	ret (0.3862)
	fhi (0.339155)
	nje (0.33184)
	ski (0.29347)
	spl (0.286369)
	nms (0.213858)
	hea (0.204499)
	rec (0.17307)
	eye (0.170503)
	cut (0.169924)
	bfe (0.149858)
	liv (0.146284)
	csk (0.140746)
	hlv (0.139256)
	che (0.136314)
	lyg (0.133103)
	nmm (0.132802)
	ute (0.132784)
	sug (0.127291)
	tra (0.123092)
	clu (0.119646)
	spc (0.113366)
	cty (0.10408)
	eje (0.0988338)