Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-cd-h-05-0-UNL.s1.3

Sequence:


               
               AAAAAGAAAAAAAAAAGTGAGGAAAATCTTTAATTTATTATAGGAGAGAGAGCTTACCTT
TGAAACGTAAAGACTTTCAAGAGTCAAAACTCCTGAAAGAGGAAACACACTTCTACTGCC
AGTAAACACCTCATTTATTTTGTGTCTGTAACTTGATTTGCACATGTACAATTGGACAAA
CGTTTTGCGGTTTTGCTTAGATTGGGTTTTTGTCACTGCTTAAGAGTTTACTTTTGTATT
TGCTTTTATGTTTGGAAATACTGAGAGCCCTTTTCTTTGGTGATATTTATTGTTTCTCTG
ATGTGCCTTTTCACTTTTCTTTGGGGTCAGTCTTTGGAATCTGGGTTTTGCTGAAGAAAG
ATGCCTCCAGCTTGGAGCTAGGGCATGTCCTGGCATTGTCACAGGCAACTCAGGCTGGGG
GCCAGAAATGCCCTCCAAGCCCCTCAGCCACAGCCTGCATGCACAGACACCCCCCTGAAG
GTGTAAGAGCCCCAAGAGAAGGACTGGCTTCCATGACCAGCCCACACCCTGACAGGCTGC
TCCATCAGGCCTTTGTGTTTGTCTGGGAACTGCTGATGGACACGTGCCCGCAGGCCTGTG
CTCCGAGCCACCCTGGCACTGGCTGAGGGGCAGCCACGCCTGAGACATGCCTGCCTGAGG
GGAAGCTGCCCCACTGAGCTCATGGGAAGGACTGGCCCCAAACCCCTTCACCTGGTTAGC
ATGACAGAGGGGAAAGAATATGCAGCCCCTCTTGTTTCCCTGCCCTGGCAAACATGGCAA
CTTCTCCCCAGTGCAGCTCACTGGTAGTGGAGGCCTGAATGCAAACAGCTGCAGTGAAAC
TGCTGCTTATGGGAGGGTTTAGTGTTTATTTACACCAACCAAGGCAGGCGGCCCTATTCT
CCAAGGTGGTTTACCTAGATTGTGTATGTAATTGGGACTTTGCCACCTTCTCCCATGCCT
GCCACCACCCCCATCTTTTTTTTCTTTTTTCTTTTTTAAGGTCTATTAACGACAGGCTCT
GCTATGTTACTCTCCCAAGCCTGGATTGTTTTATTTATTGAAAAAATTTTCATTTCCACC
TTGGCTTCATTCTAACCCCATCCTTCCCTCTGAGGCCACAGAGCACCTTTCTGGGAAGAG
ATGGACAGATGTAAAGCCACCCAGACTTCTTTGGGAAGGTGAGAATTTCCTAAAGCGGAG
GGCAGGTTCCTTTCCTTCTCGTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAGAAAAAAAAAAGTGAGGAAAATCTTTAATTTATTATAGGAGAGAGAGCTTACCTT
TGAAACGTAAAGACTTTCAAGAGTCAAAACTCCTGAAAGAGGAAACACACTTCTACTGCC
AGTAAACACCTCATTTATTTTGTGTCTGTAACTTGATTTGCACATGTACAATTGGACAAA
CGTTTTGCGGTTTTGCTTAGATTGGGTTTTTGTCACTGCTTAAGAGTTTACTTTTGTATT
TGCTTTTATGTTTGGAAATACTGAGAGCCCTTTTCTTTGGTGATATTTATTGTTTCTCTG
ATGTGCCTTTTCACTTTTCTTTGGGGTCAGTCTTTGGAATCTGGGTTTTGCTGAAGAAAG
ATGCCTCCAGCTTGGAGCTAGGGCATGTCCTGGCATTGTCACAGGCAACTCAGGCTGGGG
GCCAGAAATGCCCTCCAAGCCCCTCAGCCACAGCCTGCATGCACAGACACCCCCCTGAAG
GTGTAAGAGCCCCAAGAGAAGGACTGGCTTCCATGACCAGCCCACACCCTGACAGGCTGC
TCCATCAGGCCTTTGTGTTTGTCTGGGAACTGCTGATGGACACGTGCCCGCAGGCCTGTG
CTCCGAGCCACCCTGGCACTGGCTGAGGGGCAGCCACGCCTGAGACATGCCTGCCTGAGG
GGAAGCTGCCCCACTGAGCTCATGGGAAGGACTGGCCCCAAACCCCTTCACCTGGTTAGC
ATGACAGAGGGGAAAGAATATGCAGCCCCTCTTGTTTCCCTGCCCTGGCAAACATGGCAA
CTTCTCCCCAGTGCAGCTCACTGGTAGTGGAGGCCTGAATGCAAACAGCTGCAGTGAAAC
TGCTGCTTATGGGAGGGTTTAGTGTTTATTTACACCAACCAAGGCAGGCGGCCCTATTCT
CCAAGGTGGTTTACCTAGATTGTGTATGTAATTGGGACTTTGCCACCTTCTCCCATGCCT
GCCACCACCCCCATCTTTTTTTTCTTTTTTCTTTTTTAAGGTCTATTAACGACAGGCTCT
GCTATGTTACTCTCCCAAGCCTGGATTGTTTTATTTATTGAAAAAATTTTCATTTCCACC
TTGGCTTCATTCTAACCCCATCCTTCCCTCTGAGGCCACAGAGCACCTTTCTGGGAAGAG
ATGGACAGATGTAAAGCCACCCAGACTTCTTTGGGAAGGTGAGAATTTCCTAAAGCGGAG
GGCAGGTTCCTTTCCTTCTCGTTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               10-122, + strand, RNAz p=0.982522

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               10-122, + strand, RNAz p=0.982522

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               10-1224, gnl|bosTau2|chr2 (39002830-39001587)
               

               
               10-1224, gnl|Hg17|chr2 (135043036-135044232)
               

               
               10-1224, gnl|Mm7|chr1 (127364679-127365748)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-1224, gnl|bosTau2|chr2 (39002830-39001587)
               

               
               10-1224, gnl|Hg17|chr2 (135043036-135044232)
               

               
               10-1224, gnl|Mm7|chr1 (127364679-127365748)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               elu (0.385356)
               

               
               fce (0.271592)
               

               
               cki (0.165235)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               ova (0.129132)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               fce (0.271592)
               

               
               cki (0.165235)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               ova (0.129132)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	10-1224, gnl\|bosTau2\|chr2 (39002830-39001587)
	10-1224, gnl\|Hg17\|chr2 (135043036-135044232)
	10-1224, gnl\|Mm7\|chr1 (127364679-127365748)

	elu (0.385356)
	fce (0.271592)
	cki (0.165235)
	cst (0.140036)
	nca (0.136874)
	ova (0.129132)
	cly (0.120642)
	ebs (0.118301)
	med (0.116252)
	cty (0.10408)
	jej (0.0989218)
	eje (0.0988338)