Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-ce-b-02-0-UNL.s1.3

Sequence:


               
               AAGAGGCGCGACTTCTGACTCGCTATGTCCGCTAACAGTATGTCGGACCCACGGAGGCCT
AACAAAGTGCTGAGGTACAAACCCCCGCCCAGTGAGTGTAACCCAGCCTTGGATGACCCA
ACACCAGACTACATGAACCTGCTTGGCATGATCTTCAGCATGTGTGGCCTCATGCTCAAG
CTGAAGTGGTGCGCTTGGGTTGCCGTCTACTGTTCCTTCATCAGCTTTGCCAACTCCCGG
AGCTCTGAGGACACTAAACAGATGATGAGTAGCTTCATGCTGTCCATCTCTGCTGTGGTG
ATGTCGTATCTGCAGAACCCTCAGCCCATGACGCCCCCCTGGTGATGTCAGCCTAGAGGG
GTCCCATCCTGGACCCCTCTGTCCACCTTGCCCTAGGCCTGGGCCTTGGCTACTCAGTCT
CTGGCCCTCAACTGCAGTCCTGGGCTTCTCTGGGTGAGGTAGTCTCAGGGCCAGCAGGTG
GATGGAGGGAACTTGGCTCTGTCCCTGGGATCCCACTTCTGCTGAGGCAGCGAGGGGAAT
TGCATAGGCCAACCCACTCCTGCCTGCCTTCCCCACCCTGCCTGCTGCTGGGGGAGGTGC
TGTCCATGTTTCCAATCATTTTCATGTTGAAACCAGTTAATAAAGTTTTGCATTCTGGAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAGGCGCGACTTCTGACTCGCTATGTCCGCTAACAGTATGTCGGACCCACGGAGGCCT
AACAAAGTGCTGAGGTACAAACCCCCGCCCAGTGAGTGTAACCCAGCCTTGGATGACCCA
ACACCAGACTACATGAACCTGCTTGGCATGATCTTCAGCATGTGTGGCCTCATGCTCAAG
CTGAAGTGGTGCGCTTGGGTTGCCGTCTACTGTTCCTTCATCAGCTTTGCCAACTCCCGG
AGCTCTGAGGACACTAAACAGATGATGAGTAGCTTCATGCTGTCCATCTCTGCTGTGGTG
ATGTCGTATCTGCAGAACCCTCAGCCCATGACGCCCCCCTGGTGATGTCAGCCTAGAGGG
GTCCCATCCTGGACCCCTCTGTCCACCTTGCCCTAGGCCTGGGCCTTGGCTACTCAGTCT
CTGGCCCTCAACTGCAGTCCTGGGCTTCTCTGGGTGAGGTAGTCTCAGGGCCAGCAGGTG
GATGGAGGGAACTTGGCTCTGTCCCTGGGATCCCACTTCTGCTGAGGCAGCGAGGGGAAT
TGCATAGGCCAACCCACTCCTGCCTGCCTTCCCCACCCTGCCTGCTGCTGGGGGAGGTGC
TGTCCATGTTTCCAATCATTTTCATGTTGAAACCAGTTAATAAAGTTTTGCATTCTGGAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|48675957|ref|NP_001001645.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|48675957|ref|NP_001001645.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               275-473, + strand, RNAz p=0.85296

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               275-473, + strand, RNAz p=0.85296

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_016145, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_016145, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               73-183, gnl|bosTau2|chr7 (8383565-8383455)
               

               
               73-183, gnl|Hg17|chr19 (12641049-12640939)
               

               
               73-183, gnl|Mm7|chr8 (83669794-83669904)
               


               
               275-658, gnl|bosTau2|chr7 (8382896-8382502)
               

               
               275-658, gnl|Hg17|chr19 (12640243-12639886)
               

               
               275-658, gnl|Mm7|chr8 (83670565-83670952)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               73-183, gnl|bosTau2|chr7 (8383565-8383455)
               

               
               73-183, gnl|Hg17|chr19 (12641049-12640939)
               

               
               73-183, gnl|Mm7|chr8 (83669794-83669904)
               


               
               275-658, gnl|bosTau2|chr7 (8382896-8382502)
               

               
               275-658, gnl|Hg17|chr19 (12640243-12639886)
               

               
               275-658, gnl|Mm7|chr8 (83670565-83670952)

Expressed library(ies): 30 entry(ies)

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Expressed library(ies): 30 entry(ies)

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               ton (0.526501)
               

               
               duo (0.518403)
               

               
               ece (0.45861)
               

               
               cag (0.453583)
               

               
               hyp (0.42851)
               

               
               fcc (0.39557)
               

               
               eje (0.395335)
               

               
               ese (0.379507)
               

               
               nep (0.36785)
               

               
               nco (0.323468)
               

               
               csp (0.322373)
               

               
               pty (0.285429)
               

               
               hlv (0.278513)
               

               
               cov (0.264306)
               

               
               cly (0.241284)
               

               
               eru (0.240096)
               

               
               ebs (0.236602)
               

               
               jca (0.22792)
               

               
               mas (0.210305)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cli (0.152812)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 30 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.526501)
               

               
               duo (0.518403)
               

               
               ece (0.45861)
               

               
               cag (0.453583)
               

               
               hyp (0.42851)
               

               
               fcc (0.39557)
               

               
               eje (0.395335)
               

               
               ese (0.379507)
               

               
               nep (0.36785)
               

               
               nco (0.323468)
               

               
               csp (0.322373)
               

               
               pty (0.285429)
               

               
               hlv (0.278513)
               

               
               cov (0.264306)
               

               
               cly (0.241284)
               

               
               eru (0.240096)
               

               
               ebs (0.236602)
               

               
               jca (0.22792)
               

               
               mas (0.210305)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cli (0.152812)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	73-183, gnl\|bosTau2\|chr7 (8383565-8383455)
	73-183, gnl\|Hg17\|chr19 (12641049-12640939)
	73-183, gnl\|Mm7\|chr8 (83669794-83669904)

	275-658, gnl\|bosTau2\|chr7 (8382896-8382502)
	275-658, gnl\|Hg17\|chr19 (12640243-12639886)
	275-658, gnl\|Mm7\|chr8 (83670565-83670952)

	ton (0.526501)
	duo (0.518403)
	ece (0.45861)
	cag (0.453583)
	hyp (0.42851)
	fcc (0.39557)
	eje (0.395335)
	ese (0.379507)
	nep (0.36785)
	nco (0.323468)
	csp (0.322373)
	pty (0.285429)
	hlv (0.278513)
	cov (0.264306)
	cly (0.241284)
	eru (0.240096)
	ebs (0.236602)
	jca (0.22792)
	mas (0.210305)
	nlu (0.191681)
	fty (0.17584)
	ill (0.175593)
	eye (0.170503)
	fhi (0.169578)
	cli (0.152812)
	lnt (0.142308)
	ssp (0.13552)
	ecc (0.115035)
	nbm (0.0993246)
	jej (0.0989218)