Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-ce-f-01-0-UNL.s1.3

Sequence:


               
               GTCTTCACCTGCTTCCTCGTTGTCTTCTGGGTCTTCACCTTCTTCAAAGTCCCTGAGACC
CGCGGCAGGACTTTTGAGGAAATTACGCGGGCGTTTGAAGTGCAGGTGCCGGCAGGGAGC
CGCGCTGAGAAAGGCCCCATCGTGGAGATGAGCAGCATCCCGCCCTCCAAGGACGCCGTC
TAGGCCGGGCCTCCTTCCCACCTCCCTCGCATCAGGAAAAGCAACCTCTCCCTGAACAAG
GGCGAGCCCTCATCAGGTTGTTACTACCCAGGACTGTTTTCTGAATGCTGCTACTTGATT
CCCTCTCTCATCCCCCATGCTCGATGGGCACGCAGAGGACCCCGCGCCGGGGTGGGTCGT
TCTCTCCAGTGGCTCTTTACAGTTTCATTTCTTGGACATTCTCTTCTGTTAAAGGAGAGA
CCAAGGGAACCTACCTTCATTTCCGGAGGGATTGGCCGCTTGGCGAATGACAGCTTTGCC
AGCTCTTGCTCCCTTAGGTTCTAATCCTGCCTCCCGCAGCGTTCAGGGGAGCACGTGTGA
GGGTGCCTTTCCTCCCACCTCAGACTTAGCAGGAAGCCGATGCACATAAGAGTGTGGAGG
GCAGAGAGGGGTACCTAAGAGCACCTTCCGCACTTCCATACAGCTCGGCAGACAAAATTA
CCTTGTTTTTATTTATTTTATCGTCTGGTTTTATTGCATAAATATATATTTTTTTAACTG
TAATTTACCAAATAATGAGAGCATAAGGAAATTGAGGTTTAGAGGGAGGTACTTAAAGAG
AGGTTAGAGGATGAACGGTTTAATTCTGAAGAGGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTTCACCTGCTTCCTCGTTGTCTTCTGGGTCTTCACCTTCTTCAAAGTCCCTGAGACC
CGCGGCAGGACTTTTGAGGAAATTACGCGGGCGTTTGAAGTGCAGGTGCCGGCAGGGAGC
CGCGCTGAGAAAGGCCCCATCGTGGAGATGAGCAGCATCCCGCCCTCCAAGGACGCCGTC
TAGGCCGGGCCTCCTTCCCACCTCCCTCGCATCAGGAAAAGCAACCTCTCCCTGAACAAG
GGCGAGCCCTCATCAGGTTGTTACTACCCAGGACTGTTTTCTGAATGCTGCTACTTGATT
CCCTCTCTCATCCCCCATGCTCGATGGGCACGCAGAGGACCCCGCGCCGGGGTGGGTCGT
TCTCTCCAGTGGCTCTTTACAGTTTCATTTCTTGGACATTCTCTTCTGTTAAAGGAGAGA
CCAAGGGAACCTACCTTCATTTCCGGAGGGATTGGCCGCTTGGCGAATGACAGCTTTGCC
AGCTCTTGCTCCCTTAGGTTCTAATCCTGCCTCCCGCAGCGTTCAGGGGAGCACGTGTGA
GGGTGCCTTTCCTCCCACCTCAGACTTAGCAGGAAGCCGATGCACATAAGAGTGTGGAGG
GCAGAGAGGGGTACCTAAGAGCACCTTCCGCACTTCCATACAGCTCGGCAGACAAAATTA
CCTTGTTTTTATTTATTTTATCGTCTGGTTTTATTGCATAAATATATATTTTTTTAACTG
TAATTTACCAAATAATGAGAGCATAAGGAAATTGAGGTTTAGAGGGAGGTACTTAAAGAG
AGGTTAGAGGATGAACGGTTTAATTCTGAAGAGGTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|14486592|gb|AAK63202.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|14486592|gb|AAK63202.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               386-504, + strand, RNAz p=0.938449

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               386-504, + strand, RNAz p=0.938449

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_006931, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_006931, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-816, gnl|bosTau2|chr1 (31997629-31998445)
               

               
               1-816, gnl|Hg17|chr12 (7965467-7964577)
               

               
               1-816, gnl|Mm7|chr6 (122766934-122766155)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-816, gnl|bosTau2|chr1 (31997629-31998445)
               

               
               1-816, gnl|Hg17|chr12 (7965467-7964577)
               

               
               1-816, gnl|Mm7|chr6 (122766934-122766155)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ute (0.265569)
               

               
               cbl (0.114797)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.265569)
               

               
               cbl (0.114797)

	1-816, gnl\|bosTau2\|chr1 (31997629-31998445)
	1-816, gnl\|Hg17\|chr12 (7965467-7964577)
	1-816, gnl\|Mm7\|chr6 (122766934-122766155)