Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-cg-c-12-0-UNL.s1.3

Sequence:


               
               GCTCACCGGGCTGTGGAATCTTACACCTGCCATGCCCAGTAGTTTTGGTTCAAGCTGACT
TGTGGAACCAAAGACCAAAACTTGGTTTGGGGGCAGTTTCCATGTCTTGCTCCTCTACCT
CTCCAGTTAGTCCAGCAGTGGGAATCTGGATAAGGGAATTGTAGGGCTTAGATCAGTCTA
GGGTTTTTCCACGACTGGCTGCAGAGGAACTCTAAGCTCTCCGTGGTTCCCGGGCCCCAC
CAGGTCTGTGGACTTTGCAGAGCACCTGTCTCTTCTGAGGTTCACGAGGAAGCAGGTGTG
TCCTGTCTGGTGGCCTTGTTCGGGCGCTTGACCTCTGCCCTGGGCTGTTATGTGGGCACT
GAGATCACTGCGCTGCAGCCAGCACCTCTGCCCCAAAGAATCATGGGATAGGGTCCAAGA
ATGTGGGAGCTGAGGGCTCCCACTCAAGCTTGAGAGCACAGTGTTCTGTGCGTGGCTTTG
TTGTACTTTGTTATTTTGCTGCGTGACCATTCTAGTAATCCAGTCCTGTTCAAGTTGTGT
TCTTTTTAAGTTCTCTTATCTTCCCTTTCCTGAGACTTGTACATACTGTTTTCCTGAGTT
GTGGTAAGTTGATTTGTTTTAATTAGAGCTACTGAAAGTTACCTGTTTCCAATAAATTGT
GGGTTTGTTTTTAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCACCGGGCTGTGGAATCTTACACCTGCCATGCCCAGTAGTTTTGGTTCAAGCTGACT
TGTGGAACCAAAGACCAAAACTTGGTTTGGGGGCAGTTTCCATGTCTTGCTCCTCTACCT
CTCCAGTTAGTCCAGCAGTGGGAATCTGGATAAGGGAATTGTAGGGCTTAGATCAGTCTA
GGGTTTTTCCACGACTGGCTGCAGAGGAACTCTAAGCTCTCCGTGGTTCCCGGGCCCCAC
CAGGTCTGTGGACTTTGCAGAGCACCTGTCTCTTCTGAGGTTCACGAGGAAGCAGGTGTG
TCCTGTCTGGTGGCCTTGTTCGGGCGCTTGACCTCTGCCCTGGGCTGTTATGTGGGCACT
GAGATCACTGCGCTGCAGCCAGCACCTCTGCCCCAAAGAATCATGGGATAGGGTCCAAGA
ATGTGGGAGCTGAGGGCTCCCACTCAAGCTTGAGAGCACAGTGTTCTGTGCGTGGCTTTG
TTGTACTTTGTTATTTTGCTGCGTGACCATTCTAGTAATCCAGTCCTGTTCAAGTTGTGT
TCTTTTTAAGTTCTCTTATCTTCCCTTTCCTGAGACTTGTACATACTGTTTTCCTGAGTT
GTGGTAAGTTGATTTGTTTTAATTAGAGCTACTGAAAGTTACCTGTTTCCAATAAATTGT
GGGTTTGTTTTTAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               355-470, - strand, RNAz p=0.78924

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               355-470, - strand, RNAz p=0.78924

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               67-672, gnl|bosTau2|chr3 (75473263-75472638)
               

               
               67-672, gnl|Hg17|chr1 (37843856-37844474)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               67-672, gnl|bosTau2|chr3 (75473263-75472638)
               

               
               67-672, gnl|Hg17|chr1 (37843856-37844474)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               nms (0.213858)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	67-672, gnl\|bosTau2\|chr3 (75473263-75472638)
	67-672, gnl\|Hg17\|chr1 (37843856-37844474)

	nms (0.213858)
	thg (0.126791)
	eep (0.122564)
	nbm (0.0993246)
	jej (0.0989218)