Ss1.1-uFN-UNL-P-FN-ci-h-01-0-UNL.s1.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TACATTCAGAAGCTGACACAAATAGAAACAGGGGAGAATGTCACAGGAATGGAGCTCGAA TTTAAGCGTCTAGCCAGCTCTAAAGCTCACACCTCAAGATTCATCAGTGCCAATCTTCCA TGTAATAAATTCAAAAATCGCCTTGTTAATATTATGCCATATGAATCCACAAGGGTATGC CTGCAGCCTATCCGAGGAGTGGAAGGATCTGATTACATCAATGCCAGTTTTATTGATGGA TACAGACAACAGAAAGCTTACATCGCTACCCAGGGACCCTTGGCAGAGACCACTGAAGAC TTCTGGCGGATGCTCTGGGAACACAATTCCACCATCGTTGTGATGCTCACCAAGCTGCGT GAGATGGGCAGAGAGAAATGTCACCAATACTGGCCAGCAGAACGATCTGCAAGATACCAG TACTTTGTTGTAGATCCTATGGCTGAGTACAACATGCCACAATATATCCTAAGGGAATTC AAGGTCACAGATGCCAGGGATGGGCAGTCCCGAACCGTGAGGCAGTTTCAGTTCACCGAC TGGCCAGAGCAAGGAGTGCCAAAGTCTGGAGAAGGATTTATTGACTTCATTGGCCAAGTT CATAAAACAAAAGAGCAGTTTGGTCAAGATGGACCCATTTCAGTCCATTGCAGTGCGGGC GTTGGAAGAACTGGAGTCTTCATAACACTAAGCATCGTTTTGGAAAGAATGAGATATGAA GGCGTAGTAGATATCTTCCAGACGGTCAAAATGCTAAGAACTCAACGACCAGCCATGGTG CAGACAGAGGATCAGTATCAGTTCTGCTATCGAGCCGCGCTAGAGTACCTGGGCAGCTTC GACCACTATGCAACGTAGAAACCCCTGACCCACTTTGGATTTTTACTGAAGGCCCTTCAA TATCCATGGAGTCTCTTCTGAGCCATACAGGGCACTTGAGAAGTCCTTCTTAACTTCTAG CTAACAACCACTTAGTGGGACTATCAAACACAAAACAAATTAAAAAAAAATTTTAAAAAT TAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TACATTCAGAAGCTGACACAAATAGAAACAGGGGAGAATGTCACAGGAATGGAGCTCGAA TTTAAGCGTCTAGCCAGCTCTAAAGCTCACACCTCAAGATTCATCAGTGCCAATCTTCCA TGTAATAAATTCAAAAATCGCCTTGTTAATATTATGCCATATGAATCCACAAGGGTATGC CTGCAGCCTATCCGAGGAGTGGAAGGATCTGATTACATCAATGCCAGTTTTATTGATGGA TACAGACAACAGAAAGCTTACATCGCTACCCAGGGACCCTTGGCAGAGACCACTGAAGAC TTCTGGCGGATGCTCTGGGAACACAATTCCACCATCGTTGTGATGCTCACCAAGCTGCGT GAGATGGGCAGAGAGAAATGTCACCAATACTGGCCAGCAGAACGATCTGCAAGATACCAG TACTTTGTTGTAGATCCTATGGCTGAGTACAACATGCCACAATATATCCTAAGGGAATTC AAGGTCACAGATGCCAGGGATGGGCAGTCCCGAACCGTGAGGCAGTTTCAGTTCACCGAC TGGCCAGAGCAAGGAGTGCCAAAGTCTGGAGAAGGATTTATTGACTTCATTGGCCAAGTT CATAAAACAAAAGAGCAGTTTGGTCAAGATGGACCCATTTCAGTCCATTGCAGTGCGGGC GTTGGAAGAACTGGAGTCTTCATAACACTAAGCATCGTTTTGGAAAGAATGAGATATGAA GGCGTAGTAGATATCTTCCAGACGGTCAAAATGCTAAGAACTCAACGACCAGCCATGGTG CAGACAGAGGATCAGTATCAGTTCTGCTATCGAGCCGCGCTAGAGTACCTGGGCAGCTTC GACCACTATGCAACGTAGAAACCCCTGACCCACTTTGGATTTTTACTGAAGGCCCTTCAA TATCCATGGAGTCTCTTCTGAGCCATACAGGGCACTTGAGAAGTCCTTCTTAACTTCTAG CTAACAACCACTTAGTGGGACTATCAAACACAAAACAAATTAAAAAAAAATTTTAAAAAT TAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 867-1030, - strand, RNAz p=0.990195 | |
| 911-1030, - strand, RNAz p=0.997097 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 867-1030, - strand, RNAz p=0.990195 | |
| 911-1030, - strand, RNAz p=0.997097 |
| Aligned organism(s): 88 entry(ies) | More info |
| Aligned organism(s): 88 entry(ies) | Help | Less info |
| 65-245, gnl|bosTau2|chr8 (16168165-16168345) | |
| 65-245, gnl|canFam2|chr11 (32139288-32139493) | |
| 65-245, gnl|canFam2|chr11 (32139299-32139411) | |
| 65-245, gnl|danRer3|chr2 (8372471-8372583) | |
| 65-245, gnl|danRer3|chr6 (21505951-21505753) | |
| 65-245, gnl|dasNov1|scaffold_196 (127838-128044) | |
| 65-245, gnl|dasNov1|scaffold_196 (127849-127965) | |
| 65-245, gnl|echTel1|scaffold_296722 (44893-45100) | |
| 65-245, gnl|echTel1|scaffold_296722 (44903-45015) | |
| 65-245, gnl|fr1|chrUn (101449083-101449286) | |
| 65-245, gnl|fr1|chrUn (101449085-101449197) | |
| 65-245, gnl|galGal2|chrZ (12825240-12825449) | |
| 65-245, gnl|galGal2|chrZ (12825250-12825363) | |
| 65-245, gnl|hg17|chr5 (117083412-117083529) | |
| 65-245, gnl|hg17|chr9 (8331080-8331289) | |
| 65-245, gnl|Hg17|chr9 (8331270-8331090) | |
| 65-245, gnl|loxAfr1|scaffold_136 (72376-72584) | |
| 65-245, gnl|loxAfr1|scaffold_136 (72387-72499) | |
| 65-245, gnl|mm7|chr4 (75360020-75360229) | |
| 65-245, gnl|mm7|chr4 (75360031-75360143) | |
| 65-245, gnl|Mm7|chr4 (75360210-75360030) | |
| 65-245, gnl|monDom2|scaffold_5 (108033904-108033696) | |
| 65-245, gnl|monDom2|scaffold_5 (108033894-108033781) | |
| 65-245, gnl|oryCun1|scaffold_210064 (406962-406753) | |
| 65-245, gnl|oryCun1|scaffold_210064 (406951-406839) | |
| 65-245, gnl|panTro1|chr11 (8258646-8258855) | |
| 65-245, gnl|panTro1|chr4_random (8672835-8672718) | |
| 65-245, gnl|rheMac2|chr15 (68804592-68804384) | |
| 65-245, gnl|rheMac2|chr6 (114234491-114234610) | |
| 65-245, gnl|rn3|chr5 (94277150-94276941) | |
| 65-245, gnl|rn3|chr5 (94277139-94277027) | |
| 65-245, gnl|tetNig1|chrUn_random (56462427-56462178) | |
| 65-245, gnl|tetNig1|chrUn_random (56462424-56462312) | |
| 65-245, gnl|xenTro1|scaffold_52 (1345008-1344796) | |
| 65-245, gnl|xenTro1|scaffold_52 (1344993-1344880) | |
| 498-653, gnl|bosTau2|chr8 (16173595-16173750) | |
| 498-653, gnl|canFam2|chr11 (32134095-32134320) | |
| 498-653, gnl|canFam2|chr11 (32134139-32134300) | |
| 498-653, gnl|danRer3|chr2 (8365773-8365935) | |
| 498-653, gnl|danRer3|chr6 (21509968-21509770) | |
| 498-653, gnl|dasNov1|scaffold_196 (122515-122740) | |
| 498-653, gnl|dasNov1|scaffold_196 (122559-122721) | |
| 498-653, gnl|echTel1|scaffold_296722 (36602-36827) | |
| 498-653, gnl|echTel1|scaffold_296722 (36646-36808) | |
| 498-653, gnl|fr1|chrUn (101444405-101444583) | |
| 498-653, gnl|fr1|chrUn (101444409-101444561) | |
| 498-653, gnl|galGal2|chrZ (12815708-12815916) | |
| 498-653, gnl|galGal2|chrZ (12815739-12815895) | |
| 498-653, gnl|hg17|chr5 (117083023-117083186) | |
| 498-653, gnl|hg17|chr9 (8321556-8321759) | |
| 498-653, gnl|Hg17|chr9 (8321737-8321582) | |
| 498-653, gnl|loxAfr1|scaffold_136 (65066-65292) | |
| 498-653, gnl|loxAfr1|scaffold_136 (65110-65272) | |
| 498-653, gnl|mm7|chr4 (75354332-75354552) | |
| 498-653, gnl|mm7|chr4 (75354385-75354532) | |
| 498-653, gnl|Mm7|chr4 (75354530-75354375) | |
| 498-653, gnl|monDom2|scaffold_5 (108041463-108041240) | |
| 498-653, gnl|monDom2|scaffold_5 (108041418-108041256) | |
| 498-653, gnl|oryCun1|scaffold_210064 (413784-413561) | |
| 498-653, gnl|oryCun1|scaffold_210064 (413742-413580) | |
| 498-653, gnl|panTro1|chr11 (8249113-8249337) | |
| 498-653, gnl|panTro1|chr4_random (8673224-8673061) | |
| 498-653, gnl|rheMac2|chr15 (68813658-68813434) | |
| 498-653, gnl|rheMac2|chr6 (114234110-114234274) | |
| 498-653, gnl|rn3|chr5 (94282760-94282539) | |
| 498-653, gnl|rn3|chr5 (94282716-94282558) | |
| 498-653, gnl|tetNig1|chrUn_random (56463682-56463503) | |
| 498-653, gnl|tetNig1|chrUn_random (56463682-56463520) | |
| 498-653, gnl|xenTro1|scaffold_52 (1355280-1355054) | |
| 498-653, gnl|xenTro1|scaffold_52 (1355252-1355090) | |
| 788-1030, gnl|bosTau2|chr8 (16178535-16178777) | |
| 788-1030, gnl|canFam2|chr11 (32128578-32128736) | |
| 788-1030, gnl|danRer3|chr6 (21512184-21512012) | |
| 788-1030, gnl|dasNov1|scaffold_196 (117516-117674) | |
| 788-1030, gnl|echTel1|scaffold_254147 (1443-1289) | |
| 788-1030, gnl|galGal2|chrZ (12810041-12810228) | |
| 788-1030, gnl|hg17|chr9 (8307704-8307862) | |
| 788-1030, gnl|Hg17|chr9 (8307944-8307726) | |
| 788-1030, gnl|loxAfr1|scaffold_136 (59263-59415) | |
| 788-1030, gnl|mm7|chr4 (75348484-75348670) | |
| 788-1030, gnl|Mm7|chr4 (75348752-75348506) | |
| 788-1030, gnl|monDom2|scaffold_5 (108050917-108050748) | |
| 788-1030, gnl|oryCun1|scaffold_149344 (554-396) | |
| 788-1030, gnl|panTro1|chr11 (8235228-8235386) | |
| 788-1030, gnl|rheMac2|chr15 (68827112-68826954) | |
| 788-1030, gnl|rn3|chr5 (94288305-94288146) | |
| 788-1030, gnl|tetNig1|chrUn_random (56464330-56464173) | |
| 788-1030, gnl|xenTro1|scaffold_52 (1357772-1357619) |
| Aligned organism(s): 88 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 65-245, gnl|bosTau2|chr8 (16168165-16168345) | |
| 65-245, gnl|canFam2|chr11 (32139288-32139493) | |
| 65-245, gnl|canFam2|chr11 (32139299-32139411) | |
| 65-245, gnl|danRer3|chr2 (8372471-8372583) | |
| 65-245, gnl|danRer3|chr6 (21505951-21505753) | |
| 65-245, gnl|dasNov1|scaffold_196 (127838-128044) | |
| 65-245, gnl|dasNov1|scaffold_196 (127849-127965) | |
| 65-245, gnl|echTel1|scaffold_296722 (44893-45100) | |
| 65-245, gnl|echTel1|scaffold_296722 (44903-45015) | |
| 65-245, gnl|fr1|chrUn (101449083-101449286) | |
| 65-245, gnl|fr1|chrUn (101449085-101449197) | |
| 65-245, gnl|galGal2|chrZ (12825240-12825449) | |
| 65-245, gnl|galGal2|chrZ (12825250-12825363) | |
| 65-245, gnl|hg17|chr5 (117083412-117083529) | |
| 65-245, gnl|hg17|chr9 (8331080-8331289) | |
| 65-245, gnl|Hg17|chr9 (8331270-8331090) | |
| 65-245, gnl|loxAfr1|scaffold_136 (72376-72584) | |
| 65-245, gnl|loxAfr1|scaffold_136 (72387-72499) | |
| 65-245, gnl|mm7|chr4 (75360020-75360229) | |
| 65-245, gnl|mm7|chr4 (75360031-75360143) | |
| 65-245, gnl|Mm7|chr4 (75360210-75360030) | |
| 65-245, gnl|monDom2|scaffold_5 (108033904-108033696) | |
| 65-245, gnl|monDom2|scaffold_5 (108033894-108033781) | |
| 65-245, gnl|oryCun1|scaffold_210064 (406962-406753) | |
| 65-245, gnl|oryCun1|scaffold_210064 (406951-406839) | |
| 65-245, gnl|panTro1|chr11 (8258646-8258855) | |
| 65-245, gnl|panTro1|chr4_random (8672835-8672718) | |
| 65-245, gnl|rheMac2|chr15 (68804592-68804384) | |
| 65-245, gnl|rheMac2|chr6 (114234491-114234610) | |
| 65-245, gnl|rn3|chr5 (94277150-94276941) | |
| 65-245, gnl|rn3|chr5 (94277139-94277027) | |
| 65-245, gnl|tetNig1|chrUn_random (56462427-56462178) | |
| 65-245, gnl|tetNig1|chrUn_random (56462424-56462312) | |
| 65-245, gnl|xenTro1|scaffold_52 (1345008-1344796) | |
| 65-245, gnl|xenTro1|scaffold_52 (1344993-1344880) | |
| 498-653, gnl|bosTau2|chr8 (16173595-16173750) | |
| 498-653, gnl|canFam2|chr11 (32134095-32134320) | |
| 498-653, gnl|canFam2|chr11 (32134139-32134300) | |
| 498-653, gnl|danRer3|chr2 (8365773-8365935) | |
| 498-653, gnl|danRer3|chr6 (21509968-21509770) | |
| 498-653, gnl|dasNov1|scaffold_196 (122515-122740) | |
| 498-653, gnl|dasNov1|scaffold_196 (122559-122721) | |
| 498-653, gnl|echTel1|scaffold_296722 (36602-36827) | |
| 498-653, gnl|echTel1|scaffold_296722 (36646-36808) | |
| 498-653, gnl|fr1|chrUn (101444405-101444583) | |
| 498-653, gnl|fr1|chrUn (101444409-101444561) | |
| 498-653, gnl|galGal2|chrZ (12815708-12815916) | |
| 498-653, gnl|galGal2|chrZ (12815739-12815895) | |
| 498-653, gnl|hg17|chr5 (117083023-117083186) | |
| 498-653, gnl|hg17|chr9 (8321556-8321759) | |
| 498-653, gnl|Hg17|chr9 (8321737-8321582) | |
| 498-653, gnl|loxAfr1|scaffold_136 (65066-65292) | |
| 498-653, gnl|loxAfr1|scaffold_136 (65110-65272) | |
| 498-653, gnl|mm7|chr4 (75354332-75354552) | |
| 498-653, gnl|mm7|chr4 (75354385-75354532) | |
| 498-653, gnl|Mm7|chr4 (75354530-75354375) | |
| 498-653, gnl|monDom2|scaffold_5 (108041463-108041240) | |
| 498-653, gnl|monDom2|scaffold_5 (108041418-108041256) | |
| 498-653, gnl|oryCun1|scaffold_210064 (413784-413561) | |
| 498-653, gnl|oryCun1|scaffold_210064 (413742-413580) | |
| 498-653, gnl|panTro1|chr11 (8249113-8249337) | |
| 498-653, gnl|panTro1|chr4_random (8673224-8673061) | |
| 498-653, gnl|rheMac2|chr15 (68813658-68813434) | |
| 498-653, gnl|rheMac2|chr6 (114234110-114234274) | |
| 498-653, gnl|rn3|chr5 (94282760-94282539) | |
| 498-653, gnl|rn3|chr5 (94282716-94282558) | |
| 498-653, gnl|tetNig1|chrUn_random (56463682-56463503) | |
| 498-653, gnl|tetNig1|chrUn_random (56463682-56463520) | |
| 498-653, gnl|xenTro1|scaffold_52 (1355280-1355054) | |
| 498-653, gnl|xenTro1|scaffold_52 (1355252-1355090) | |
| 788-1030, gnl|bosTau2|chr8 (16178535-16178777) | |
| 788-1030, gnl|canFam2|chr11 (32128578-32128736) | |
| 788-1030, gnl|danRer3|chr6 (21512184-21512012) | |
| 788-1030, gnl|dasNov1|scaffold_196 (117516-117674) | |
| 788-1030, gnl|echTel1|scaffold_254147 (1443-1289) | |
| 788-1030, gnl|galGal2|chrZ (12810041-12810228) | |
| 788-1030, gnl|hg17|chr9 (8307704-8307862) | |
| 788-1030, gnl|Hg17|chr9 (8307944-8307726) | |
| 788-1030, gnl|loxAfr1|scaffold_136 (59263-59415) | |
| 788-1030, gnl|mm7|chr4 (75348484-75348670) | |
| 788-1030, gnl|Mm7|chr4 (75348752-75348506) | |
| 788-1030, gnl|monDom2|scaffold_5 (108050917-108050748) | |
| 788-1030, gnl|oryCun1|scaffold_149344 (554-396) | |
| 788-1030, gnl|panTro1|chr11 (8235228-8235386) | |
| 788-1030, gnl|rheMac2|chr15 (68827112-68826954) | |
| 788-1030, gnl|rn3|chr5 (94288305-94288146) | |
| 788-1030, gnl|tetNig1|chrUn_random (56464330-56464173) | |
| 788-1030, gnl|xenTro1|scaffold_52 (1357772-1357619) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ese (0.126502) |