Ss1.1-uFN-UNL-P-FN-ck-b-01-0-UNL.s1.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGCTGAAAATCCCTTTGGCACTCGAAAAGCCAGATCCTCCTTTGGTCGTGGCTTTTTCA AAATAAAAAGTAGCAAGAGGACAGCAAGTGCACCAAACTTGGCTGAAACAGAGAAGGAGA CACCCGAGCATTTAGATCTGGCAGGTGTATCTTCTCGGCCAAAAGATTCGCAGGGGAGCA GTCCCTTCCAGATGGCTCCACCATCACCAGATTCCAAAAAGAAATCCAGGGGTATCATGA AGCTCTTTGGAAGACTTAGGAGAAGTCAATCAACTACATTCAATCCAGATGACATGTCTG AGCCTGAATTCAAAAGAGGAGGGACAAGGGCAACTGCAGGGCCCCGATTGGGTTGGTCTC GAGATTTGGGACAATCTCACAGTGACTTGGATATGCCATTTGCCAAGTGGACCAAGGAAC AGGTTTGCAATTGGCTTATGGAACAAGGCCTGGGGTCCTACCTGAATTCTGGCAAGCACT GGATTGCATCTGGCCAAACACTGTTGCAGGCTTCTCAACAAGATCTAGAGAAGGAACTTG GAATCAAGCATTCACTTCATCGAAAGAAGCTCCAGCTGGCACTGCAAGCCCTGGGATCTG AAGAAGAAACTAATCACGGGAAGCTGGATTTCAACTGGGTCACTAGATGGTTGGATGATA TTGGTCTCCCCCAGTACAAGACCCAGTTCGATGAAGGACGGGTAGATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGCTGAAAATCCCTTTGGCACTCGAAAAGCCAGATCCTCCTTTGGTCGTGGCTTTTTCA AAATAAAAAGTAGCAAGAGGACAGCAAGTGCACCAAACTTGGCTGAAACAGAGAAGGAGA CACCCGAGCATTTAGATCTGGCAGGTGTATCTTCTCGGCCAAAAGATTCGCAGGGGAGCA GTCCCTTCCAGATGGCTCCACCATCACCAGATTCCAAAAAGAAATCCAGGGGTATCATGA AGCTCTTTGGAAGACTTAGGAGAAGTCAATCAACTACATTCAATCCAGATGACATGTCTG AGCCTGAATTCAAAAGAGGAGGGACAAGGGCAACTGCAGGGCCCCGATTGGGTTGGTCTC GAGATTTGGGACAATCTCACAGTGACTTGGATATGCCATTTGCCAAGTGGACCAAGGAAC AGGTTTGCAATTGGCTTATGGAACAAGGCCTGGGGTCCTACCTGAATTCTGGCAAGCACT GGATTGCATCTGGCCAAACACTGTTGCAGGCTTCTCAACAAGATCTAGAGAAGGAACTTG GAATCAAGCATTCACTTCATCGAAAGAAGCTCCAGCTGGCACTGCAAGCCCTGGGATCTG AAGAAGAAACTAATCACGGGAAGCTGGATTTCAACTGGGTCACTAGATGGTTGGATGATA TTGGTCTCCCCCAGTACAAGACCCAGTTCGATGAAGGACGGGTAGATG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 132-252, - strand, RNAz p=0.849294 | |
| 133-252, - strand, RNAz p=0.649433 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 132-252, - strand, RNAz p=0.849294 | |
| 133-252, - strand, RNAz p=0.649433 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 102-252, gnl|bosTau2|chr17 (24162135-24162285) | |
| 102-252, gnl|canFam2|chr27 (23055430-23055329) | |
| 102-252, gnl|danRer3|chr18 (11122567-11122656) | |
| 102-252, gnl|dasNov1|scaffold_17848 (56687-56594) | |
| 102-252, gnl|echTel1|scaffold_211961 (1737-1636) | |
| 102-252, gnl|fr1|chrUn (113462785-113462874) | |
| 102-252, gnl|galGal2|chr1 (64871918-64872010) | |
| 102-252, gnl|hg17|chr12 (27723679-27723780) | |
| 102-252, gnl|Hg17|chr12 (27723688-27723838) | |
| 102-252, gnl|loxAfr1|scaffold_42756 (8132-8031) | |
| 102-252, gnl|mm7|chr6 (147097343-147097441) | |
| 102-252, gnl|Mm7|chr6 (147097352-147097499) | |
| 102-252, gnl|monDom2|scaffold_71 (8202585-8202484) | |
| 102-252, gnl|panTro1|chrUn_random (54155111-54155209) | |
| 102-252, gnl|rheMac2|chr11 (27963555-27963656) | |
| 102-252, gnl|rn3|chr4 (184867456-184867554) | |
| 102-252, gnl|tetNig1|chr13 (4658898-4658809) | |
| 375-534, gnl|bosTau2|chr17 (24164694-24164853) | |
| 375-534, gnl|canFam2|chr27 (23053403-23053233) | |
| 375-534, gnl|danRer3|chr18 (11124528-11124696) | |
| 375-534, gnl|dasNov1|scaffold_610 (100422-100252) | |
| 375-534, gnl|echTel1|scaffold_320400 (47850-48013) | |
| 375-534, gnl|fr1|chrUn (113463231-113463396) | |
| 375-534, gnl|galGal2|chr1 (64873258-64873422) | |
| 375-534, gnl|hg17|chr12 (27725735-27725906) | |
| 375-534, gnl|Hg17|chr12 (27725738-27725897) | |
| 375-534, gnl|loxAfr1|scaffold_13686 (15359-15188) | |
| 375-534, gnl|mm7|chr6 (147099611-147099777) | |
| 375-534, gnl|Mm7|chr6 (147099612-147099771) | |
| 375-534, gnl|monDom2|scaffold_71 (8200544-8200372) | |
| 375-534, gnl|oryCun1|scaffold_211175 (4884-4723) | |
| 375-534, gnl|panTro1|chrUn_random (54157402-54157573) | |
| 375-534, gnl|rheMac2|chr11 (27965610-27965781) | |
| 375-534, gnl|rn3|chr4 (184869529-184869692) | |
| 375-534, gnl|tetNig1|chr13 (4658465-4658302) | |
| 375-534, gnl|xenTro1|scaffold_1517 (52615-52444) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 102-252, gnl|bosTau2|chr17 (24162135-24162285) | |
| 102-252, gnl|canFam2|chr27 (23055430-23055329) | |
| 102-252, gnl|danRer3|chr18 (11122567-11122656) | |
| 102-252, gnl|dasNov1|scaffold_17848 (56687-56594) | |
| 102-252, gnl|echTel1|scaffold_211961 (1737-1636) | |
| 102-252, gnl|fr1|chrUn (113462785-113462874) | |
| 102-252, gnl|galGal2|chr1 (64871918-64872010) | |
| 102-252, gnl|hg17|chr12 (27723679-27723780) | |
| 102-252, gnl|Hg17|chr12 (27723688-27723838) | |
| 102-252, gnl|loxAfr1|scaffold_42756 (8132-8031) | |
| 102-252, gnl|mm7|chr6 (147097343-147097441) | |
| 102-252, gnl|Mm7|chr6 (147097352-147097499) | |
| 102-252, gnl|monDom2|scaffold_71 (8202585-8202484) | |
| 102-252, gnl|panTro1|chrUn_random (54155111-54155209) | |
| 102-252, gnl|rheMac2|chr11 (27963555-27963656) | |
| 102-252, gnl|rn3|chr4 (184867456-184867554) | |
| 102-252, gnl|tetNig1|chr13 (4658898-4658809) | |
| 375-534, gnl|bosTau2|chr17 (24164694-24164853) | |
| 375-534, gnl|canFam2|chr27 (23053403-23053233) | |
| 375-534, gnl|danRer3|chr18 (11124528-11124696) | |
| 375-534, gnl|dasNov1|scaffold_610 (100422-100252) | |
| 375-534, gnl|echTel1|scaffold_320400 (47850-48013) | |
| 375-534, gnl|fr1|chrUn (113463231-113463396) | |
| 375-534, gnl|galGal2|chr1 (64873258-64873422) | |
| 375-534, gnl|hg17|chr12 (27725735-27725906) | |
| 375-534, gnl|Hg17|chr12 (27725738-27725897) | |
| 375-534, gnl|loxAfr1|scaffold_13686 (15359-15188) | |
| 375-534, gnl|mm7|chr6 (147099611-147099777) | |
| 375-534, gnl|Mm7|chr6 (147099612-147099771) | |
| 375-534, gnl|monDom2|scaffold_71 (8200544-8200372) | |
| 375-534, gnl|oryCun1|scaffold_211175 (4884-4723) | |
| 375-534, gnl|panTro1|chrUn_random (54157402-54157573) | |
| 375-534, gnl|rheMac2|chr11 (27965610-27965781) | |
| 375-534, gnl|rn3|chr4 (184869529-184869692) | |
| 375-534, gnl|tetNig1|chr13 (4658465-4658302) | |
| 375-534, gnl|xenTro1|scaffold_1517 (52615-52444) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| che (0.136314) |