Ss1.1-uFN-UNL-P-FN-ck-f-11-0-UNL.s1.3
|
CCAGCAGGCTGGCGTTTACTTAGCCCAATACTTTTTCCCTTTTCTTTCCTCTTTTTTTTT
TTTTCCCCTTCCTTCCATTCTTTTCTTTTTTTTAAGAGTTCACCGTTTGGTATTTTCTCC
TCCCCCAGGCGAGGGAGTGGTTCTGTTCTCTCCCTACCCACTGGCTGGGTCCCAGCAGGG
CTGGGGAGCTGGGTGGGGTGCCAGTGGGGGTGGAGGGACCCTCCCCAGGCTGGGAGGGGT
CCTTGCCCTTCTGCCCCACTGGCAAGAATTAGAGTCTCGGTCTTGGAACCTCCTGGCATT
GGGACCAGAGCATGTCTAGGATTTTTGTTGTCGTTTTTAATTACCTAACGCTTTTAGAAA
GTGAATGTTAGAAGGTGCCTCCTGAGATAGGACGGAGCATTTGCTCTGGCTGGAGAAGGC
TCTGGTCAGCTCGGCCAGTCCCTTCCTGCCCCACAGACACCTGGCACTTTACAAGAGGGT
TGGCCGCACCGTCTCCGGTTGAAGTGAGCCCCTTCTGTGCCTGTATGACCTCAACCCCGT
GGGGAGATGCATTCAGGGTGTATTTGAGGTCTGATTCAAAGTTCTGGGGCATTAGGCATA
AGAGAGCTGGCTTCGATGCTGTTGGGGAGAATTCCCCAAACCAGGCACCCCAGCCACACG
GTAGCTGAGGTCTGAACAGTCATCCCAGAAGGAGACAGAGCCTGCCACATCCTCCCACGC
CAGGCCCTGGGCCGGGGTAACTGGACTAACAGAATTTGGCCACAACCAAATTGATGTTGG
CGGAGCCGGAGGCCTGGCGCCCCGGCCTCATCCCCACGTGGGAGTCCTTTCTTCGGCCCT
CTGGTCCCCTCGAGCTCAGTGAATCCCCACTCGTGCCCACAGCTCCGGACTTAAAATCCT
ATATATAGAGAGAGATAGAAAGAATATATTAGAGATATTTTTGGAAAGGAATTGGTCTAT
GCAATGCTAGTTTGGAATCTTCTTGAAAGCCAGTTTAACGTTTTTACTAGGAGAGTTAAA
GAAAAGAAAAATCTACAATATTTTTAGGGTTTCCCCCCCGCCCCCGGTCACCCTACAAAC
AGCACATGGCATGACCTGCCAGGATGGAGAATGGCCGTGGTTTCCTCTCCTTAGAGGGGT
GAGTGGGGAAGTGGGGGGAGGGGAGGGTTTTTTGGGTTTTTTTTTAATGCCCCTCTTAAC
AGAATGTTGCCACCCCGACCCCGACTTAGTGGGCTGTGTTCGTATCTCTGTCCCAGCTCC
TGTTGTAGAAAATAACATTGTAAGGGGGAAATCAGCCTAGTGTCAGTGTCTTGGTTTGGG
GGAAAAATTAAATGTTGCAGTTTT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCAGCAGGCTGGCGTTTACTTAGCCCAATACTTTTTCCCTTTTCTTTCCTCTTTTTTTTT
TTTTCCCCTTCCTTCCATTCTTTTCTTTTTTTTAAGAGTTCACCGTTTGGTATTTTCTCC
TCCCCCAGGCGAGGGAGTGGTTCTGTTCTCTCCCTACCCACTGGCTGGGTCCCAGCAGGG
CTGGGGAGCTGGGTGGGGTGCCAGTGGGGGTGGAGGGACCCTCCCCAGGCTGGGAGGGGT
CCTTGCCCTTCTGCCCCACTGGCAAGAATTAGAGTCTCGGTCTTGGAACCTCCTGGCATT
GGGACCAGAGCATGTCTAGGATTTTTGTTGTCGTTTTTAATTACCTAACGCTTTTAGAAA
GTGAATGTTAGAAGGTGCCTCCTGAGATAGGACGGAGCATTTGCTCTGGCTGGAGAAGGC
TCTGGTCAGCTCGGCCAGTCCCTTCCTGCCCCACAGACACCTGGCACTTTACAAGAGGGT
TGGCCGCACCGTCTCCGGTTGAAGTGAGCCCCTTCTGTGCCTGTATGACCTCAACCCCGT
GGGGAGATGCATTCAGGGTGTATTTGAGGTCTGATTCAAAGTTCTGGGGCATTAGGCATA
AGAGAGCTGGCTTCGATGCTGTTGGGGAGAATTCCCCAAACCAGGCACCCCAGCCACACG
GTAGCTGAGGTCTGAACAGTCATCCCAGAAGGAGACAGAGCCTGCCACATCCTCCCACGC
CAGGCCCTGGGCCGGGGTAACTGGACTAACAGAATTTGGCCACAACCAAATTGATGTTGG
CGGAGCCGGAGGCCTGGCGCCCCGGCCTCATCCCCACGTGGGAGTCCTTTCTTCGGCCCT
CTGGTCCCCTCGAGCTCAGTGAATCCCCACTCGTGCCCACAGCTCCGGACTTAAAATCCT
ATATATAGAGAGAGATAGAAAGAATATATTAGAGATATTTTTGGAAAGGAATTGGTCTAT
GCAATGCTAGTTTGGAATCTTCTTGAAAGCCAGTTTAACGTTTTTACTAGGAGAGTTAAA
GAAAAGAAAAATCTACAATATTTTTAGGGTTTCCCCCCCGCCCCCGGTCACCCTACAAAC
AGCACATGGCATGACCTGCCAGGATGGAGAATGGCCGTGGTTTCCTCTCCTTAGAGGGGT
GAGTGGGGAAGTGGGGGGAGGGGAGGGTTTTTTGGGTTTTTTTTTAATGCCCCTCTTAAC
AGAATGTTGCCACCCCGACCCCGACTTAGTGGGCTGTGTTCGTATCTCTGTCCCAGCTCC
TGTTGTAGAAAATAACATTGTAAGGGGGAAATCAGCCTAGTGTCAGTGTCTTGGTTTGGG
GGAAAAATTAAATGTTGCAGTTTT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
161-301, + strand, RNAmicro p=0.99874 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
161-301, + strand, RNAmicro p=0.99874 |
|
107-214, BP150236 full-length enriched swine cDNA library, adult ovary Sus
(dbj|BP150236.1|), blast E-value=1.4013e-45, identity=97.22% |
|
107-214, CJ020043 full-length enriched swine cDNA library, adult spleen Sus
(dbj|CJ020043.1|), blast E-value=0, identity=100% |
|
107-313, 503549 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BM089719.1|),
blast E-value=0, identity=88.1% |
|
107-313, BovGen_22008 normal cattle brain Bos taurus cDNA clone
(gb|CO893683.1|), blast E-value=0, identity=88.1% |
|
107-313, LB02810.CR_C19 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV908149.1|),
blast E-value=0, identity=87.62% |
|
107-313, 000925BEMN017160HT BEMN Bos taurus cDNA, mRNA sequence
(gb|DY081057.1|), blast E-value=8.96831e-44, identity=87.14% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
107-214, BP150236 full-length enriched swine cDNA library, adult ovary Sus
(dbj|BP150236.1|), blast E-value=1.4013e-45, identity=97.22% |
|
107-214, CJ020043 full-length enriched swine cDNA library, adult spleen Sus
(dbj|CJ020043.1|), blast E-value=0, identity=100% |
|
107-313, 503549 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BM089719.1|),
blast E-value=0, identity=88.1% |
|
107-313, BovGen_22008 normal cattle brain Bos taurus cDNA clone
(gb|CO893683.1|), blast E-value=0, identity=88.1% |
|
107-313, LB02810.CR_C19 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV908149.1|),
blast E-value=0, identity=87.62% |
|
107-313, 000925BEMN017160HT BEMN Bos taurus cDNA, mRNA sequence
(gb|DY081057.1|), blast E-value=8.96831e-44, identity=87.14% |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
cki (0.330469) |
|
fbs (0.175346) |
|
hyp (0.142837) |
|
pla (0.133672) |
|
eep (0.122564) |
|
med (0.116252) |
|
jej (0.0989218) |
|
eje (0.0988338) |
|
cki (0.330469) |
|
fbs (0.175346) |
|
hyp (0.142837) |
|
pla (0.133672) |
|
eep (0.122564) |
|
med (0.116252) |
|
jej (0.0989218) |
|
eje (0.0988338) |