Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-ck-f-11-0-UNL.s1.3

Sequence:


               
               CCAGCAGGCTGGCGTTTACTTAGCCCAATACTTTTTCCCTTTTCTTTCCTCTTTTTTTTT
TTTTCCCCTTCCTTCCATTCTTTTCTTTTTTTTAAGAGTTCACCGTTTGGTATTTTCTCC
TCCCCCAGGCGAGGGAGTGGTTCTGTTCTCTCCCTACCCACTGGCTGGGTCCCAGCAGGG
CTGGGGAGCTGGGTGGGGTGCCAGTGGGGGTGGAGGGACCCTCCCCAGGCTGGGAGGGGT
CCTTGCCCTTCTGCCCCACTGGCAAGAATTAGAGTCTCGGTCTTGGAACCTCCTGGCATT
GGGACCAGAGCATGTCTAGGATTTTTGTTGTCGTTTTTAATTACCTAACGCTTTTAGAAA
GTGAATGTTAGAAGGTGCCTCCTGAGATAGGACGGAGCATTTGCTCTGGCTGGAGAAGGC
TCTGGTCAGCTCGGCCAGTCCCTTCCTGCCCCACAGACACCTGGCACTTTACAAGAGGGT
TGGCCGCACCGTCTCCGGTTGAAGTGAGCCCCTTCTGTGCCTGTATGACCTCAACCCCGT
GGGGAGATGCATTCAGGGTGTATTTGAGGTCTGATTCAAAGTTCTGGGGCATTAGGCATA
AGAGAGCTGGCTTCGATGCTGTTGGGGAGAATTCCCCAAACCAGGCACCCCAGCCACACG
GTAGCTGAGGTCTGAACAGTCATCCCAGAAGGAGACAGAGCCTGCCACATCCTCCCACGC
CAGGCCCTGGGCCGGGGTAACTGGACTAACAGAATTTGGCCACAACCAAATTGATGTTGG
CGGAGCCGGAGGCCTGGCGCCCCGGCCTCATCCCCACGTGGGAGTCCTTTCTTCGGCCCT
CTGGTCCCCTCGAGCTCAGTGAATCCCCACTCGTGCCCACAGCTCCGGACTTAAAATCCT
ATATATAGAGAGAGATAGAAAGAATATATTAGAGATATTTTTGGAAAGGAATTGGTCTAT
GCAATGCTAGTTTGGAATCTTCTTGAAAGCCAGTTTAACGTTTTTACTAGGAGAGTTAAA
GAAAAGAAAAATCTACAATATTTTTAGGGTTTCCCCCCCGCCCCCGGTCACCCTACAAAC
AGCACATGGCATGACCTGCCAGGATGGAGAATGGCCGTGGTTTCCTCTCCTTAGAGGGGT
GAGTGGGGAAGTGGGGGGAGGGGAGGGTTTTTTGGGTTTTTTTTTAATGCCCCTCTTAAC
AGAATGTTGCCACCCCGACCCCGACTTAGTGGGCTGTGTTCGTATCTCTGTCCCAGCTCC
TGTTGTAGAAAATAACATTGTAAGGGGGAAATCAGCCTAGTGTCAGTGTCTTGGTTTGGG
GGAAAAATTAAATGTTGCAGTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGCAGGCTGGCGTTTACTTAGCCCAATACTTTTTCCCTTTTCTTTCCTCTTTTTTTTT
TTTTCCCCTTCCTTCCATTCTTTTCTTTTTTTTAAGAGTTCACCGTTTGGTATTTTCTCC
TCCCCCAGGCGAGGGAGTGGTTCTGTTCTCTCCCTACCCACTGGCTGGGTCCCAGCAGGG
CTGGGGAGCTGGGTGGGGTGCCAGTGGGGGTGGAGGGACCCTCCCCAGGCTGGGAGGGGT
CCTTGCCCTTCTGCCCCACTGGCAAGAATTAGAGTCTCGGTCTTGGAACCTCCTGGCATT
GGGACCAGAGCATGTCTAGGATTTTTGTTGTCGTTTTTAATTACCTAACGCTTTTAGAAA
GTGAATGTTAGAAGGTGCCTCCTGAGATAGGACGGAGCATTTGCTCTGGCTGGAGAAGGC
TCTGGTCAGCTCGGCCAGTCCCTTCCTGCCCCACAGACACCTGGCACTTTACAAGAGGGT
TGGCCGCACCGTCTCCGGTTGAAGTGAGCCCCTTCTGTGCCTGTATGACCTCAACCCCGT
GGGGAGATGCATTCAGGGTGTATTTGAGGTCTGATTCAAAGTTCTGGGGCATTAGGCATA
AGAGAGCTGGCTTCGATGCTGTTGGGGAGAATTCCCCAAACCAGGCACCCCAGCCACACG
GTAGCTGAGGTCTGAACAGTCATCCCAGAAGGAGACAGAGCCTGCCACATCCTCCCACGC
CAGGCCCTGGGCCGGGGTAACTGGACTAACAGAATTTGGCCACAACCAAATTGATGTTGG
CGGAGCCGGAGGCCTGGCGCCCCGGCCTCATCCCCACGTGGGAGTCCTTTCTTCGGCCCT
CTGGTCCCCTCGAGCTCAGTGAATCCCCACTCGTGCCCACAGCTCCGGACTTAAAATCCT
ATATATAGAGAGAGATAGAAAGAATATATTAGAGATATTTTTGGAAAGGAATTGGTCTAT
GCAATGCTAGTTTGGAATCTTCTTGAAAGCCAGTTTAACGTTTTTACTAGGAGAGTTAAA
GAAAAGAAAAATCTACAATATTTTTAGGGTTTCCCCCCCGCCCCCGGTCACCCTACAAAC
AGCACATGGCATGACCTGCCAGGATGGAGAATGGCCGTGGTTTCCTCTCCTTAGAGGGGT
GAGTGGGGAAGTGGGGGGAGGGGAGGGTTTTTTGGGTTTTTTTTTAATGCCCCTCTTAAC
AGAATGTTGCCACCCCGACCCCGACTTAGTGGGCTGTGTTCGTATCTCTGTCCCAGCTCC
TGTTGTAGAAAATAACATTGTAAGGGGGAAATCAGCCTAGTGTCAGTGTCTTGGTTTGGG
GGAAAAATTAAATGTTGCAGTTTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               107-313, - strand, RNAz p=0.999855
               

               
               354-473, - strand, RNAz p=0.690589

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               107-313, - strand, RNAz p=0.999855
               

               
               354-473, - strand, RNAz p=0.690589

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               161-301, + strand, RNAmicro p=0.99874

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               161-301, + strand, RNAmicro p=0.99874

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               107-214, BP150236 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|BP150236.1|), blast E-value=1.4013e-45, identity=97.22% 
               

               
               107-214, CJ020043 full-length enriched swine cDNA library, adult spleen Sus 
(dbj|CJ020043.1|), blast E-value=0, identity=100% 
               

               
               107-313, 503549 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BM089719.1|), 
blast E-value=0, identity=88.1% 
               

               
               107-313, BovGen_22008 normal cattle brain Bos taurus cDNA clone 
(gb|CO893683.1|), blast E-value=0, identity=88.1% 
               

               
               107-313, LB02810.CR_C19 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV908149.1|), 
blast E-value=0, identity=87.62% 
               

               
               107-313, 000925BEMN017160HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY081057.1|), blast E-value=8.96831e-44, identity=87.14%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               107-214, BP150236 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|BP150236.1|), blast E-value=1.4013e-45, identity=97.22% 
               

               
               107-214, CJ020043 full-length enriched swine cDNA library, adult spleen Sus 
(dbj|CJ020043.1|), blast E-value=0, identity=100% 
               

               
               107-313, 503549 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BM089719.1|), 
blast E-value=0, identity=88.1% 
               

               
               107-313, BovGen_22008 normal cattle brain Bos taurus cDNA clone 
(gb|CO893683.1|), blast E-value=0, identity=88.1% 
               

               
               107-313, LB02810.CR_C19 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV908149.1|), 
blast E-value=0, identity=87.62% 
               

               
               107-313, 000925BEMN017160HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY081057.1|), blast E-value=8.96831e-44, identity=87.14%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-511, gnl|bosTau2|chr11 (77422022-77421509)
               

               
               1-511, gnl|Hg17|chr9 (127783738-127783234)
               

               
               1-511, gnl|Mm7|chr2 (32575891-32576345)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-511, gnl|bosTau2|chr11 (77422022-77421509)
               

               
               1-511, gnl|Hg17|chr9 (127783738-127783234)
               

               
               1-511, gnl|Mm7|chr2 (32575891-32576345)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cki (0.330469)
               

               
               fbs (0.175346)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.330469)
               

               
               fbs (0.175346)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	107-313, - strand, RNAz p=0.999855
	354-473, - strand, RNAz p=0.690589

	107-214, BP150236 full-length enriched swine cDNA library, adult ovary Sus (dbj\|BP150236.1\|), blast E-value=1.4013e-45, identity=97.22%
	107-214, CJ020043 full-length enriched swine cDNA library, adult spleen Sus (dbj\|CJ020043.1\|), blast E-value=0, identity=100%
	107-313, 503549 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb\|BM089719.1\|), blast E-value=0, identity=88.1%
	107-313, BovGen_22008 normal cattle brain Bos taurus cDNA clone (gb\|CO893683.1\|), blast E-value=0, identity=88.1%
	107-313, LB02810.CR_C19 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb\|DV908149.1\|), blast E-value=0, identity=87.62%
	107-313, 000925BEMN017160HT BEMN Bos taurus cDNA, mRNA sequence (gb\|DY081057.1\|), blast E-value=8.96831e-44, identity=87.14%

	1-511, gnl\|bosTau2\|chr11 (77422022-77421509)
	1-511, gnl\|Hg17\|chr9 (127783738-127783234)
	1-511, gnl\|Mm7\|chr2 (32575891-32576345)

	cki (0.330469)
	fbs (0.175346)
	hyp (0.142837)
	pla (0.133672)
	eep (0.122564)
	med (0.116252)
	jej (0.0989218)
	eje (0.0988338)