Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-cn-h-03-0-UNL.s1.3

Sequence:


               
               CCCCCCCCCAGGAAAATGGTAGGGGAATGGTAAGTTCTTTAGGGCAAAAACTGGGTCTTC
TGTTTTCTTTTTATGATTAGGCTATGGTTCTGTGCAAAGTAGGTACTCAACGAATGTTTC
TGGAATCATAATATTCTCAACAGATTTGTTATTGAGCATCTGCTTCATGATAAGTACTCT
GTCAGATCCTTGGGATGCAAAATTAAATAAGACACATTCCTTTTACCCAAAGATCTCACC
ATGAAGTTGGGGGAGGGGGAGTGGAATTCAAAATATGTTAATAAATCATTACAGTACTGT
GAGATAAGTGCAATTAAGAAGTTTAGATATAAAGTATAGGGGAAAAAAGAGGAGCAATCA
TGTCTGAAAAAGTCAGGGAAGTGTTCTTGGAGGTAATTTTTAAGCTGATGGTTGAAGAAT
TAAGTAGTAGGAGCTTGCCAGATGGAAAAGTCCAGGCAGAGTGTAACATGAAGTGAAAAG
GCCGAACTCTAGAAATGGCAGAGTGTGTTCCTAGTTTGTTTGTTTGTTTGTTTGTACCTG
CCTTGTTCCAGAAAGGATTTAAGATGGTTTATGTTCCAGTCTTTCAATGCTGGAATGGCT
AGAGATGAGACTGAAAGATGGACAGGAAGTATATCATCAAGAGCTTTGAATTTGATGCTA
ATAATGTGTGTGAATTTTATATTATGAGAAATGAGGCGCTCTGGTGGCCTGATATAATCA
GGTTTATGTTTTAGAATTTTTCTGTATATTGAATGAAGAAAAAGAATTGAATCGTATGTA
ACAAGTGTGATCCCATTTTTTGTAAATGACAAAACCATGTGTGTATATTTATATGTGTTT
ATATATACTTGTATATGCAAAGGAAAAGGTCTGAAAGGATATATGCAAAACTGTTCACAG
TGATGACCTCTGGGGAATGGGCTTGGAGGGGAGGGAGCTATATACTTGTTTGTATGCTGG
GTGGGCATTGTGCTTTTATTTCTGCATTGTTTGAATTTTTTATAAGAATGTATTATTTTT
GTAATAAAAAATTAAAAATTCCAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCCCCCCAGGAAAATGGTAGGGGAATGGTAAGTTCTTTAGGGCAAAAACTGGGTCTTC
TGTTTTCTTTTTATGATTAGGCTATGGTTCTGTGCAAAGTAGGTACTCAACGAATGTTTC
TGGAATCATAATATTCTCAACAGATTTGTTATTGAGCATCTGCTTCATGATAAGTACTCT
GTCAGATCCTTGGGATGCAAAATTAAATAAGACACATTCCTTTTACCCAAAGATCTCACC
ATGAAGTTGGGGGAGGGGGAGTGGAATTCAAAATATGTTAATAAATCATTACAGTACTGT
GAGATAAGTGCAATTAAGAAGTTTAGATATAAAGTATAGGGGAAAAAAGAGGAGCAATCA
TGTCTGAAAAAGTCAGGGAAGTGTTCTTGGAGGTAATTTTTAAGCTGATGGTTGAAGAAT
TAAGTAGTAGGAGCTTGCCAGATGGAAAAGTCCAGGCAGAGTGTAACATGAAGTGAAAAG
GCCGAACTCTAGAAATGGCAGAGTGTGTTCCTAGTTTGTTTGTTTGTTTGTTTGTACCTG
CCTTGTTCCAGAAAGGATTTAAGATGGTTTATGTTCCAGTCTTTCAATGCTGGAATGGCT
AGAGATGAGACTGAAAGATGGACAGGAAGTATATCATCAAGAGCTTTGAATTTGATGCTA
ATAATGTGTGTGAATTTTATATTATGAGAAATGAGGCGCTCTGGTGGCCTGATATAATCA
GGTTTATGTTTTAGAATTTTTCTGTATATTGAATGAAGAAAAAGAATTGAATCGTATGTA
ACAAGTGTGATCCCATTTTTTGTAAATGACAAAACCATGTGTGTATATTTATATGTGTTT
ATATATACTTGTATATGCAAAGGAAAAGGTCTGAAAGGATATATGCAAAACTGTTCACAG
TGATGACCTCTGGGGAATGGGCTTGGAGGGGAGGGAGCTATATACTTGTTTGTATGCTGG
GTGGGCATTGTGCTTTTATTTCTGCATTGTTTGAATTTTTTATAAGAATGTATTATTTTT
GTAATAAAAAATTAAAAATTCCAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1038, gnl|bosTau2|chrX (22300205-22301236)
               

               
               1-1038, gnl|Hg17|chrX (70467846-70468867)
               

               
               1-1038, gnl|Mm7|chrX (96927369-96928378)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1038, gnl|bosTau2|chrX (22300205-22301236)
               

               
               1-1038, gnl|Hg17|chrX (70467846-70468867)
               

               
               1-1038, gnl|Mm7|chrX (96927369-96928378)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

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               sag (0.36543)
               

               
               lin (0.291206)
               

               
               hlv (0.278513)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               liv (0.146284)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               jej (0.0989218)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.36543)
               

               
               lin (0.291206)
               

               
               hlv (0.278513)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               liv (0.146284)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               jej (0.0989218)

	1-1038, gnl\|bosTau2\|chrX (22300205-22301236)
	1-1038, gnl\|Hg17\|chrX (70467846-70468867)
	1-1038, gnl\|Mm7\|chrX (96927369-96928378)

	sag (0.36543)
	lin (0.291206)
	hlv (0.278513)
	thg (0.253582)
	tra (0.246184)
	cbe (0.239234)
	hea (0.204499)
	gul (0.177588)
	fbs (0.175346)
	liv (0.146284)
	kid (0.129735)
	bla (0.124347)
	jej (0.0989218)