Ss1.1-uFN-UNL-P-FN-co-f-12-0-UNL.s1.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGGCCGGGATGGCGGCAGCGACGGCCGGGGCCGGGGCAGGAGCTGGGGCGGCCCAGGAG AAGCAGTTCCCGCCGGCGCTGCTGAGCTTCTTCATCTACAACCCGCGCTTCGGGCCGCGC GAGGGAGAGGAGGAAAATAAAATTCTCTTCTATTATCCAAATGAAGTAGAAAAGAATGAA AAAATTAGAAATGTCGGATTATGTGAAGCTATTGTCCAGTTTACAAGGACCTTTAGTCCA TCAAAACCTGCAAAATCTTTACACACACAGAAGAACAGGCAGTTCTTCAATGAACCAGAA GACAATTTCTGGATGGTCATGGTTGTTCGGAATCCTATAATTGAGAAGCAAAGTAAAGAT GGAAAACCGATTGTTGAATACCAAGAGGAGGAGTTGCTGGACAAGGTGTATAGTTCAGTG CTCCAGCAGTGCTACAGCATGTACAAGCTTTTTAATGGTACATTTCTGAGAGCCATGGAA GACGGAGGCGTCAAGCTCCTAAAAGAAAGATTAGAGAAATTCTTCCATCGGTATTTGCAA ACGTTGCATTTGCAGTCATGTGATCTCCTTGACATTTTTGGCGGCATCAGCTTCTTCCCA TTGGATAAAATGACATATTTGAAAATCCAGTCCTTTATTAATAGAATGGAAGAAAGCCTG AGTATAGTCAAGTACACTGCCTTTCTCTATAACGATCAACTCATATGGAGCGGACTGGAG CAAGACGACATGAGAATTCTCTACAAATACCTCACCACATCCCTCTTTCCTCGGCACATC GAACCCGAGTTGGCGGGAAGGGATTCTCCAATTCGGGCCGAGATGCCAGGAAACCTTCAG CACTATGGCAGATTTCTTACTGGACCCTTGAACCTAAATGACCCAGAAGCAAAATGCAGA TTCCCCAAAATTTTTGTAAATACAGATGACACTTACGAAGCCCTGCATTTAATTGTTTAT AAGGCCATGAGTGCGGCTGTGTGCTTTATGATCGATGCTTCTATCCAGCCCACGTTGGAT TTTTGCCGAAGACTGGACGGCATCGTTGGGCCGCAGCTCACGGTGCTGGCGTCTGACATT TGCGAGCAGTTCAACGTCAACAAAAGGATATCTGGGTCTGAAAAGGAGCCCCAGTTTAAG TACATATACTTCAACCACATGAACTTAGCAGAGAAGAGCACGATCCACATGAGGAAAACG CCCAGCGTGTCCCTTACGTCTGTTCATCCGGATTTGATGAAGATCCTGGGCGACATCAAC AGCGATTTTACCAGAGAGGACGAGGACGAGGAGGTCATCGTGAAAGCCATGAGTGATTAC TGGGTTGTTGGCAAGAAATCTGACCAGCGGGAGCTGTACGTTATCTTGAATCAAAAAAAC GCAAACCTGATTGAAGTCAACGAAGAGGTCAAGAAACTCTGTGCGACGCAGTTTAATAAC ATCTTCTTCTTGGACTGACCGACCGTGGCTGGCCGCACCCTCTGCTAACCAACAGCTCAG CAAGCATCTTGGTCACCACTGCGGGTTACTGGTCATATTATTGACTGGATTCATGACAAT AGTAAAGCAATACTTGCTTTGAAGAATCAAATTTCTACTCAGCCTGACGATCCCGAGGTT TTTAGATTTTAAATATTTATGTGGAATTAATTCAAGGTAGCCGGCTCCATCTCTGTCATT CCATTCTTTTGACATTACGTGAATATTTTACTGGAACATAAGACTAATAAATTGTTAAAG TTTTTCAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGGCCGGGATGGCGGCAGCGACGGCCGGGGCCGGGGCAGGAGCTGGGGCGGCCCAGGAG AAGCAGTTCCCGCCGGCGCTGCTGAGCTTCTTCATCTACAACCCGCGCTTCGGGCCGCGC GAGGGAGAGGAGGAAAATAAAATTCTCTTCTATTATCCAAATGAAGTAGAAAAGAATGAA AAAATTAGAAATGTCGGATTATGTGAAGCTATTGTCCAGTTTACAAGGACCTTTAGTCCA TCAAAACCTGCAAAATCTTTACACACACAGAAGAACAGGCAGTTCTTCAATGAACCAGAA GACAATTTCTGGATGGTCATGGTTGTTCGGAATCCTATAATTGAGAAGCAAAGTAAAGAT GGAAAACCGATTGTTGAATACCAAGAGGAGGAGTTGCTGGACAAGGTGTATAGTTCAGTG CTCCAGCAGTGCTACAGCATGTACAAGCTTTTTAATGGTACATTTCTGAGAGCCATGGAA GACGGAGGCGTCAAGCTCCTAAAAGAAAGATTAGAGAAATTCTTCCATCGGTATTTGCAA ACGTTGCATTTGCAGTCATGTGATCTCCTTGACATTTTTGGCGGCATCAGCTTCTTCCCA TTGGATAAAATGACATATTTGAAAATCCAGTCCTTTATTAATAGAATGGAAGAAAGCCTG AGTATAGTCAAGTACACTGCCTTTCTCTATAACGATCAACTCATATGGAGCGGACTGGAG CAAGACGACATGAGAATTCTCTACAAATACCTCACCACATCCCTCTTTCCTCGGCACATC GAACCCGAGTTGGCGGGAAGGGATTCTCCAATTCGGGCCGAGATGCCAGGAAACCTTCAG CACTATGGCAGATTTCTTACTGGACCCTTGAACCTAAATGACCCAGAAGCAAAATGCAGA TTCCCCAAAATTTTTGTAAATACAGATGACACTTACGAAGCCCTGCATTTAATTGTTTAT AAGGCCATGAGTGCGGCTGTGTGCTTTATGATCGATGCTTCTATCCAGCCCACGTTGGAT TTTTGCCGAAGACTGGACGGCATCGTTGGGCCGCAGCTCACGGTGCTGGCGTCTGACATT TGCGAGCAGTTCAACGTCAACAAAAGGATATCTGGGTCTGAAAAGGAGCCCCAGTTTAAG TACATATACTTCAACCACATGAACTTAGCAGAGAAGAGCACGATCCACATGAGGAAAACG CCCAGCGTGTCCCTTACGTCTGTTCATCCGGATTTGATGAAGATCCTGGGCGACATCAAC AGCGATTTTACCAGAGAGGACGAGGACGAGGAGGTCATCGTGAAAGCCATGAGTGATTAC TGGGTTGTTGGCAAGAAATCTGACCAGCGGGAGCTGTACGTTATCTTGAATCAAAAAAAC GCAAACCTGATTGAAGTCAACGAAGAGGTCAAGAAACTCTGTGCGACGCAGTTTAATAAC ATCTTCTTCTTGGACTGACCGACCGTGGCTGGCCGCACCCTCTGCTAACCAACAGCTCAG CAAGCATCTTGGTCACCACTGCGGGTTACTGGTCATATTATTGACTGGATTCATGACAAT AGTAAAGCAATACTTGCTTTGAAGAATCAAATTTCTACTCAGCCTGACGATCCCGAGGTT TTTAGATTTTAAATATTTATGTGGAATTAATTCAAGGTAGCCGGCTCCATCTCTGTCATT CCATTCTTTTGACATTACGTGAATATTTTACTGGAACATAAGACTAATAAATTGTTAAAG TTTTTCAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 80 entry(ies) | More info |
| Aligned organism(s): 80 entry(ies) | Help | Less info |
| 1-130, gnl|bosTau2|chr25 (35858487-35858364) | |
| 1-130, gnl|Hg17|chr7 (5711663-5711792) | |
| 1-130, gnl|Mm7|chr5 (143042850-143042727) | |
| 520-708, gnl|bosTau2|chr25 (35853423-35853235) | |
| 520-708, gnl|canFam2|chr6 (14334111-14334305) | |
| 520-708, gnl|danRer3|chr12 (12248156-12247959) | |
| 520-708, gnl|dasNov1|scaffold_67900 (3269-3463) | |
| 520-708, gnl|echTel1|scaffold_286121 (45270-45076) | |
| 520-708, gnl|fr1|chrUn (189915804-189915617) | |
| 520-708, gnl|galGal2|chr14 (3217486-3217292) | |
| 520-708, gnl|hg17|chr7 (5717955-5718150) | |
| 520-708, gnl|Hg17|chr7 (5717953-5718142) | |
| 520-708, gnl|loxAfr1|scaffold_104577 (843-649) | |
| 520-708, gnl|mm7|chr5 (143032259-143032064) | |
| 520-708, gnl|Mm7|chr5 (143032259-143032071) | |
| 520-708, gnl|monDom2|scaffold_19 (43821886-43821692) | |
| 520-708, gnl|oryCun1|scaffold_115808 (5389-5589) | |
| 520-708, gnl|panTro1|chr6 (6160664-6160858) | |
| 520-708, gnl|rheMac2|chr3 (45136249-45136055) | |
| 520-708, gnl|rn3|chr12 (10967973-10968168) | |
| 520-708, gnl|tetNig1|chr2 (3925940-3926121) | |
| 520-708, gnl|xenTro1|scaffold_6 (2370785-2370979) | |
| 849-964, gnl|bosTau2|chr25 (35849292-35849177) | |
| 849-964, gnl|canFam2|chr6 (14344791-14344940) | |
| 849-964, gnl|danRer3|chr12 (12240355-12240216) | |
| 849-964, gnl|dasNov1|scaffold_9934 (16517-16641) | |
| 849-964, gnl|echTel1|scaffold_286121 (39498-39345) | |
| 849-964, gnl|fr1|chrUn (189914956-189914818) | |
| 849-964, gnl|galGal2|chr14 (3214961-3214806) | |
| 849-964, gnl|hg17|chr7 (5725684-5725837) | |
| 849-964, gnl|Hg17|chr7 (5725712-5725827) | |
| 849-964, gnl|loxAfr1|scaffold_79777 (8454-8301) | |
| 849-964, gnl|mm7|chr5 (143026336-143026184) | |
| 849-964, gnl|Mm7|chr5 (143026306-143026191) | |
| 849-964, gnl|monDom2|scaffold_19 (43814156-43814003) | |
| 849-964, gnl|oryCun1|scaffold_115808 (12985-13138) | |
| 849-964, gnl|panTro1|chr6 (6168374-6168527) | |
| 849-964, gnl|rheMac2|chr3 (45128151-45127998) | |
| 849-964, gnl|rn3|chr12 (10974298-10974448) | |
| 849-964, gnl|tetNig1|chr2 (3927109-3927241) | |
| 849-964, gnl|xenTro1|scaffold_6 (2377928-2378067) | |
| 992-1120, gnl|bosTau2|chr25 (35845141-35845013) | |
| 992-1120, gnl|canFam2|chr6 (14351517-14351657) | |
| 992-1120, gnl|danRer3|chr12 (12237474-12237328) | |
| 992-1120, gnl|dasNov1|scaffold_26042 (12320-12174) | |
| 992-1120, gnl|echTel1|scaffold_286121 (37338-37191) | |
| 992-1120, gnl|fr1|chrUn (189914428-189914294) | |
| 992-1120, gnl|galGal2|chr14 (3213548-3213401) | |
| 992-1120, gnl|hg17|chr7 (5732701-5732848) | |
| 992-1120, gnl|Hg17|chr7 (5732714-5732843) | |
| 992-1120, gnl|mm7|chr5 (143020676-143020530) | |
| 992-1120, gnl|Mm7|chr5 (143020661-143020533) | |
| 992-1120, gnl|monDom2|scaffold_19 (43811486-43811343) | |
| 992-1120, gnl|oryCun1|scaffold_195801 (6550-6696) | |
| 992-1120, gnl|panTro1|chr6_random (38649587-38649440) | |
| 992-1120, gnl|rheMac2|chr3 (45120935-45120788) | |
| 992-1120, gnl|rn3|chr12 (10980431-10980575) | |
| 992-1120, gnl|tetNig1|chr2 (3927644-3927773) | |
| 992-1120, gnl|xenTro1|scaffold_6 (2380013-2380142) | |
| 1272-1400, gnl|bosTau2|chr25 (35843819-35843691) | |
| 1272-1400, gnl|canFam2|chr6 (14358990-14359150) | |
| 1272-1400, gnl|danRer3|chr12 (12227569-12227433) | |
| 1272-1400, gnl|dasNov1|scaffold_26042 (2259-2099) | |
| 1272-1400, gnl|echTel1|scaffold_286121 (35194-35047) | |
| 1272-1400, gnl|fr1|chrUn (189913099-189912960) | |
| 1272-1400, gnl|galGal2|chr14 (3210619-3210456) | |
| 1272-1400, gnl|hg17|chr7 (5736702-5736862) | |
| 1272-1400, gnl|Hg17|chr7 (5736704-5736832) | |
| 1272-1400, gnl|loxAfr1|scaffold_15912 (9877-9717) | |
| 1272-1400, gnl|mm7|chr5 (143018801-143018642) | |
| 1272-1400, gnl|Mm7|chr5 (143018797-143018669) | |
| 1272-1400, gnl|monDom2|scaffold_19 (43804269-43804109) | |
| 1272-1400, gnl|panTro1|chr6_random (38645599-38645439) | |
| 1272-1400, gnl|rheMac2|chr15 (97166040-97166169) | |
| 1272-1400, gnl|rn3|chr12 (10981977-10982137) | |
| 1272-1400, gnl|tetNig1|chr2 (3928970-3929109) | |
| 1272-1400, gnl|xenTro1|scaffold_6 (2386419-2386586) | |
| 1402-1750, gnl|bosTau2|chr25 (35842957-35842608) | |
| 1402-1750, gnl|Hg17|chr7 (5738503-5738846) | |
| 1402-1750, gnl|Mm7|chr5 (143016279-143015940) |
| Aligned organism(s): 80 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-130, gnl|bosTau2|chr25 (35858487-35858364) | |
| 1-130, gnl|Hg17|chr7 (5711663-5711792) | |
| 1-130, gnl|Mm7|chr5 (143042850-143042727) | |
| 520-708, gnl|bosTau2|chr25 (35853423-35853235) | |
| 520-708, gnl|canFam2|chr6 (14334111-14334305) | |
| 520-708, gnl|danRer3|chr12 (12248156-12247959) | |
| 520-708, gnl|dasNov1|scaffold_67900 (3269-3463) | |
| 520-708, gnl|echTel1|scaffold_286121 (45270-45076) | |
| 520-708, gnl|fr1|chrUn (189915804-189915617) | |
| 520-708, gnl|galGal2|chr14 (3217486-3217292) | |
| 520-708, gnl|hg17|chr7 (5717955-5718150) | |
| 520-708, gnl|Hg17|chr7 (5717953-5718142) | |
| 520-708, gnl|loxAfr1|scaffold_104577 (843-649) | |
| 520-708, gnl|mm7|chr5 (143032259-143032064) | |
| 520-708, gnl|Mm7|chr5 (143032259-143032071) | |
| 520-708, gnl|monDom2|scaffold_19 (43821886-43821692) | |
| 520-708, gnl|oryCun1|scaffold_115808 (5389-5589) | |
| 520-708, gnl|panTro1|chr6 (6160664-6160858) | |
| 520-708, gnl|rheMac2|chr3 (45136249-45136055) | |
| 520-708, gnl|rn3|chr12 (10967973-10968168) | |
| 520-708, gnl|tetNig1|chr2 (3925940-3926121) | |
| 520-708, gnl|xenTro1|scaffold_6 (2370785-2370979) | |
| 849-964, gnl|bosTau2|chr25 (35849292-35849177) | |
| 849-964, gnl|canFam2|chr6 (14344791-14344940) | |
| 849-964, gnl|danRer3|chr12 (12240355-12240216) | |
| 849-964, gnl|dasNov1|scaffold_9934 (16517-16641) | |
| 849-964, gnl|echTel1|scaffold_286121 (39498-39345) | |
| 849-964, gnl|fr1|chrUn (189914956-189914818) | |
| 849-964, gnl|galGal2|chr14 (3214961-3214806) | |
| 849-964, gnl|hg17|chr7 (5725684-5725837) | |
| 849-964, gnl|Hg17|chr7 (5725712-5725827) | |
| 849-964, gnl|loxAfr1|scaffold_79777 (8454-8301) | |
| 849-964, gnl|mm7|chr5 (143026336-143026184) | |
| 849-964, gnl|Mm7|chr5 (143026306-143026191) | |
| 849-964, gnl|monDom2|scaffold_19 (43814156-43814003) | |
| 849-964, gnl|oryCun1|scaffold_115808 (12985-13138) | |
| 849-964, gnl|panTro1|chr6 (6168374-6168527) | |
| 849-964, gnl|rheMac2|chr3 (45128151-45127998) | |
| 849-964, gnl|rn3|chr12 (10974298-10974448) | |
| 849-964, gnl|tetNig1|chr2 (3927109-3927241) | |
| 849-964, gnl|xenTro1|scaffold_6 (2377928-2378067) | |
| 992-1120, gnl|bosTau2|chr25 (35845141-35845013) | |
| 992-1120, gnl|canFam2|chr6 (14351517-14351657) | |
| 992-1120, gnl|danRer3|chr12 (12237474-12237328) | |
| 992-1120, gnl|dasNov1|scaffold_26042 (12320-12174) | |
| 992-1120, gnl|echTel1|scaffold_286121 (37338-37191) | |
| 992-1120, gnl|fr1|chrUn (189914428-189914294) | |
| 992-1120, gnl|galGal2|chr14 (3213548-3213401) | |
| 992-1120, gnl|hg17|chr7 (5732701-5732848) | |
| 992-1120, gnl|Hg17|chr7 (5732714-5732843) | |
| 992-1120, gnl|mm7|chr5 (143020676-143020530) | |
| 992-1120, gnl|Mm7|chr5 (143020661-143020533) | |
| 992-1120, gnl|monDom2|scaffold_19 (43811486-43811343) | |
| 992-1120, gnl|oryCun1|scaffold_195801 (6550-6696) | |
| 992-1120, gnl|panTro1|chr6_random (38649587-38649440) | |
| 992-1120, gnl|rheMac2|chr3 (45120935-45120788) | |
| 992-1120, gnl|rn3|chr12 (10980431-10980575) | |
| 992-1120, gnl|tetNig1|chr2 (3927644-3927773) | |
| 992-1120, gnl|xenTro1|scaffold_6 (2380013-2380142) | |
| 1272-1400, gnl|bosTau2|chr25 (35843819-35843691) | |
| 1272-1400, gnl|canFam2|chr6 (14358990-14359150) | |
| 1272-1400, gnl|danRer3|chr12 (12227569-12227433) | |
| 1272-1400, gnl|dasNov1|scaffold_26042 (2259-2099) | |
| 1272-1400, gnl|echTel1|scaffold_286121 (35194-35047) | |
| 1272-1400, gnl|fr1|chrUn (189913099-189912960) | |
| 1272-1400, gnl|galGal2|chr14 (3210619-3210456) | |
| 1272-1400, gnl|hg17|chr7 (5736702-5736862) | |
| 1272-1400, gnl|Hg17|chr7 (5736704-5736832) | |
| 1272-1400, gnl|loxAfr1|scaffold_15912 (9877-9717) | |
| 1272-1400, gnl|mm7|chr5 (143018801-143018642) | |
| 1272-1400, gnl|Mm7|chr5 (143018797-143018669) | |
| 1272-1400, gnl|monDom2|scaffold_19 (43804269-43804109) | |
| 1272-1400, gnl|panTro1|chr6_random (38645599-38645439) | |
| 1272-1400, gnl|rheMac2|chr15 (97166040-97166169) | |
| 1272-1400, gnl|rn3|chr12 (10981977-10982137) | |
| 1272-1400, gnl|tetNig1|chr2 (3928970-3929109) | |
| 1272-1400, gnl|xenTro1|scaffold_6 (2386419-2386586) | |
| 1402-1750, gnl|bosTau2|chr25 (35842957-35842608) | |
| 1402-1750, gnl|Hg17|chr7 (5738503-5738846) | |
| 1402-1750, gnl|Mm7|chr5 (143016279-143015940) |
| Expressed library(ies): 33 entry(ies) | More info |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
| mgm (0.541028) | |
| cki (0.495704) | |
| lyg (0.399308) | |
| sto (0.359648) | |
| vin (0.332557) | |
| mga (0.32041) | |
| bfe (0.299715) | |
| cte (0.29274) | |
| cga (0.279096) | |
| cbe (0.239234) | |
| pan (0.23596) | |
| aor (0.195274) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| ill (0.175593) | |
| sin (0.174948) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| cje (0.165235) | |
| tbr (0.154178) | |
| fat (0.147427) | |
| ski (0.146735) | |
| lin (0.145603) | |
| pla (0.133672) | |
| kid (0.129735) | |
| ova (0.129132) | |
| ret (0.128733) | |
| thg (0.126791) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eep (0.122564) | |
| ecc (0.115035) | |
| ldo (0.0970026) |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mgm (0.541028) | |
| cki (0.495704) | |
| lyg (0.399308) | |
| sto (0.359648) | |
| vin (0.332557) | |
| mga (0.32041) | |
| bfe (0.299715) | |
| cte (0.29274) | |
| cga (0.279096) | |
| cbe (0.239234) | |
| pan (0.23596) | |
| aor (0.195274) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| ill (0.175593) | |
| sin (0.174948) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| cje (0.165235) | |
| tbr (0.154178) | |
| fat (0.147427) | |
| ski (0.146735) | |
| lin (0.145603) | |
| pla (0.133672) | |
| kid (0.129735) | |
| ova (0.129132) | |
| ret (0.128733) | |
| thg (0.126791) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eep (0.122564) | |
| ecc (0.115035) | |
| ldo (0.0970026) |