Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-cq-a-09-0-UNL.s1.3

Sequence:


               
               TTTCATCCTCATCCTCCCCCATCAACCTCGTTATCCTTGTTCCGAGAGTACTGGGGACAA
CAGCTCCCTCCAGACAAAGCCAGCATCCACCCAAGGCTGGAAGTGCCCAGGGGGCCATGG
AAGGTTCCTTGTGCTCCTTCTGCCCTTCCAGGCTCCCCCGGCCTGGGCAGCTGCCTCCGC
AAAACCGCTCTGGTTCTACTGAGAAAGGCCTCTCCAGCAATAATGTTTTCTAGTCACTTC
CTCTGTCTCCAGGAATGGCATGAGGTGGGGAGTTTCACCCTGTGCCTGGACACTGTACCG
ACTTTGATAGATTTCTACACTGAGGTTTGAATTCATATCGTCTGACTTGCTTTTACTTCT
CTGTACAAAAATGATTTTGAAGAGATTTTAAAGATGTCCCCTTTGTACTCCCCTGTGTCA
GCCGCCACTGATCCTGTCAGTGATGGTGGCTGTGGTGTGGAGTTTGCCTTGTACTGAGGG
TTCAGGGTGGGGAAGCAATTTGTATTTTATTTTTTTCTTAGCACAAGCAGGTGAACTGGG
AGCAGCTCTGTGACTCCCCTTCTTTAACTTCACAGCTCACCAGGACTGTTTTTATAAACT
GCTGTATTTTGAAACCCCTTCCTTACTTAACCCAGGCCAGCAAGCTCTTTACTGAAATTG
GCCTTAAGGGGCTCTTGCCCTTGGAGGCCTGGAATTCTGAACCTCATCCGTCCTGCTCCT
GAGGGGGGAGAAGGGGAAGTGCACTTTGGAGTGTTGTTTCCTAAGTAAGCCATTAGGAGC
GTCCACTCCCCTGTGAACTTTCTGGCAACAAAGAGAACATTCTCTCTGGGGCTCTTTCTC
CTGCCTTCTCAGGAAAGCTGGTATCCGATTTTTGACCATTAGTCTTGTTGATTCCACTGG
GTGCATCCCTTCCCCAAATTTCCTGCCCTCCCTGGAGACTGGAGGCCTGGGGAAAAAGAA
TCCAGGTTCTCAAATGAGGGCCTGGTAGGATTCTGAGCAGAGCGACAGGATCCTGCTGAC
ACAACAGGAAGCCCCAGAGTGCTCTCTCCCAGAGGGGAAACAGATAGGGCTGGTGTTCTG
GGTCAGCAGAACGGGACCCCAGTGGGGTCTGAATTGATGAAGAGCCAGACCACTCCACTA
GCCTCATAGCAGAGGCTGGGTGTGCTGAGGTCTCAGAAGAGGGTCCTCTTTGGTGGCAGG
GCTGGGAGCAGCCTGGGTCTGGAGTGGTCAGCCAGGCCCAGCCACAGGTCTGATGTCTCC
ACTTGTACCCATAGGCCGTATCGCTCTGTTTACAGTGACCTGCCCCAAGCCCTTCCCCCA
GAGGGCCTGGGGTTTCAGAGGTCTGTCTCCCCTTTGGTTCAATGGTTATTCAATGATTTG
ATTTTTTTTTTCCTCCATAAACTTATTAACCTGGCTTTCCCCCATTTCAATTCCTGTGAT
TTATGCCAATAAAGTTTGCCATTATTTTCAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCATCCTCATCCTCCCCCATCAACCTCGTTATCCTTGTTCCGAGAGTACTGGGGACAA
CAGCTCCCTCCAGACAAAGCCAGCATCCACCCAAGGCTGGAAGTGCCCAGGGGGCCATGG
AAGGTTCCTTGTGCTCCTTCTGCCCTTCCAGGCTCCCCCGGCCTGGGCAGCTGCCTCCGC
AAAACCGCTCTGGTTCTACTGAGAAAGGCCTCTCCAGCAATAATGTTTTCTAGTCACTTC
CTCTGTCTCCAGGAATGGCATGAGGTGGGGAGTTTCACCCTGTGCCTGGACACTGTACCG
ACTTTGATAGATTTCTACACTGAGGTTTGAATTCATATCGTCTGACTTGCTTTTACTTCT
CTGTACAAAAATGATTTTGAAGAGATTTTAAAGATGTCCCCTTTGTACTCCCCTGTGTCA
GCCGCCACTGATCCTGTCAGTGATGGTGGCTGTGGTGTGGAGTTTGCCTTGTACTGAGGG
TTCAGGGTGGGGAAGCAATTTGTATTTTATTTTTTTCTTAGCACAAGCAGGTGAACTGGG
AGCAGCTCTGTGACTCCCCTTCTTTAACTTCACAGCTCACCAGGACTGTTTTTATAAACT
GCTGTATTTTGAAACCCCTTCCTTACTTAACCCAGGCCAGCAAGCTCTTTACTGAAATTG
GCCTTAAGGGGCTCTTGCCCTTGGAGGCCTGGAATTCTGAACCTCATCCGTCCTGCTCCT
GAGGGGGGAGAAGGGGAAGTGCACTTTGGAGTGTTGTTTCCTAAGTAAGCCATTAGGAGC
GTCCACTCCCCTGTGAACTTTCTGGCAACAAAGAGAACATTCTCTCTGGGGCTCTTTCTC
CTGCCTTCTCAGGAAAGCTGGTATCCGATTTTTGACCATTAGTCTTGTTGATTCCACTGG
GTGCATCCCTTCCCCAAATTTCCTGCCCTCCCTGGAGACTGGAGGCCTGGGGAAAAAGAA
TCCAGGTTCTCAAATGAGGGCCTGGTAGGATTCTGAGCAGAGCGACAGGATCCTGCTGAC
ACAACAGGAAGCCCCAGAGTGCTCTCTCCCAGAGGGGAAACAGATAGGGCTGGTGTTCTG
GGTCAGCAGAACGGGACCCCAGTGGGGTCTGAATTGATGAAGAGCCAGACCACTCCACTA
GCCTCATAGCAGAGGCTGGGTGTGCTGAGGTCTCAGAAGAGGGTCCTCTTTGGTGGCAGG
GCTGGGAGCAGCCTGGGTCTGGAGTGGTCAGCCAGGCCCAGCCACAGGTCTGATGTCTCC
ACTTGTACCCATAGGCCGTATCGCTCTGTTTACAGTGACCTGCCCCAAGCCCTTCCCCCA
GAGGGCCTGGGGTTTCAGAGGTCTGTCTCCCCTTTGGTTCAATGGTTATTCAATGATTTG
ATTTTTTTTTTCCTCCATAAACTTATTAACCTGGCTTTCCCCCATTTCAATTCCTGTGAT
TTATGCCAATAAAGTTTGCCATTATTTTCAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1067-1402, + strand, RNAz p=0.99982
               

               
               1079-1209, - strand, RNAz p=0.962129
               

               
               1279-1446, - strand, RNAz p=0.967819

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1067-1402, + strand, RNAz p=0.99982
               

               
               1079-1209, - strand, RNAz p=0.962129
               

               
               1279-1446, - strand, RNAz p=0.967819

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               1067-1195, BP433490 full-length enriched swine cDNA library, adult lung Sus 
(dbj|BP433490.1|), blast E-value=0, identity=100% 
               

               
               1067-1381, DB812646 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|DB812646.1|), blast E-value=0, identity=100% 
               

               
               1067-1381, DB817818 full-length enriched swine cDNA library, adult testis Sus 
(dbj|DB817818.1|), blast E-value=0, identity=100% 
               

               
               1067-1380, POSM0100003_A07 porcine skeletal muscle cDNA library (PoSM) Sus 
(gb|BM190028.1|), blast E-value=0, identity=99.04% 
               

               
               1067-1300, 1437142 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DT883987.1|), 
blast E-value=3e-29, identity=83.54% 
               

               
               1067-1300, 1454867 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DT885826.1|), 
blast E-value=3e-29, identity=83.54%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               1067-1195, BP433490 full-length enriched swine cDNA library, adult lung Sus 
(dbj|BP433490.1|), blast E-value=0, identity=100% 
               

               
               1067-1381, DB812646 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|DB812646.1|), blast E-value=0, identity=100% 
               

               
               1067-1381, DB817818 full-length enriched swine cDNA library, adult testis Sus 
(dbj|DB817818.1|), blast E-value=0, identity=100% 
               

               
               1067-1380, POSM0100003_A07 porcine skeletal muscle cDNA library (PoSM) Sus 
(gb|BM190028.1|), blast E-value=0, identity=99.04% 
               

               
               1067-1300, 1437142 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DT883987.1|), 
blast E-value=3e-29, identity=83.54% 
               

               
               1067-1300, 1454867 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DT885826.1|), 
blast E-value=3e-29, identity=83.54%

Homologous human UTR: 3 entry(ies)

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Homologous human UTR: 3 entry(ies)

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               5' of NM_002859, +
               

               
               5' of NM_002859, -
               

               
               5' of NM_002859, -

Homologous human UTR: 3 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_002859, +
               

               
               5' of NM_002859, -
               

               
               5' of NM_002859, -

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               160-945, gnl|bosTau2|chr17 (38453727-38454521)
               


               
               962-1470, gnl|bosTau2|chr17 (38454561-38455069)
               

               
               962-1470, gnl|canFam2|chr26 (19183421-19183937)
               

               
               962-1470, gnl|dasNov1|scaffold_1641 (101546-102117)
               

               
               962-1470, gnl|echTel1|scaffold_160701 (3879-4328)
               

               
               962-1470, gnl|hg17|chr12 (119110950-119111434)
               

               
               962-1470, gnl|Hg17|chr12 (119111448-119110970)
               

               
               962-1470, gnl|loxAfr1|scaffold_2359 (80907-81396)
               

               
               962-1470, gnl|mm7|chr5 (114776856-114776361)
               

               
               962-1470, gnl|Mm7|chr5 (114776345-114776834)
               

               
               962-1470, gnl|monDom2|scaffold_101 (63121-62710)
               

               
               962-1470, gnl|oryCun1|scaffold_160289 (3647-4157)
               

               
               962-1470, gnl|panTro1|chr10 (122111479-122111965)
               

               
               962-1470, gnl|rheMac2|chr11 (121212155-121212641)
               

               
               962-1470, gnl|rn3|chr12 (42185561-42186080)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               160-945, gnl|bosTau2|chr17 (38453727-38454521)
               


               
               962-1470, gnl|bosTau2|chr17 (38454561-38455069)
               

               
               962-1470, gnl|canFam2|chr26 (19183421-19183937)
               

               
               962-1470, gnl|dasNov1|scaffold_1641 (101546-102117)
               

               
               962-1470, gnl|echTel1|scaffold_160701 (3879-4328)
               

               
               962-1470, gnl|hg17|chr12 (119110950-119111434)
               

               
               962-1470, gnl|Hg17|chr12 (119111448-119110970)
               

               
               962-1470, gnl|loxAfr1|scaffold_2359 (80907-81396)
               

               
               962-1470, gnl|mm7|chr5 (114776856-114776361)
               

               
               962-1470, gnl|Mm7|chr5 (114776345-114776834)
               

               
               962-1470, gnl|monDom2|scaffold_101 (63121-62710)
               

               
               962-1470, gnl|oryCun1|scaffold_160289 (3647-4157)
               

               
               962-1470, gnl|panTro1|chr10 (122111479-122111965)
               

               
               962-1470, gnl|rheMac2|chr11 (121212155-121212641)
               

               
               962-1470, gnl|rn3|chr12 (42185561-42186080)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               cov (0.396458)
               

               
               fcc (0.197785)
               

               
               duo (0.172801)
               

               
               lnt (0.142308)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               jca (0.11396)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.396458)
               

               
               fcc (0.197785)
               

               
               duo (0.172801)
               

               
               lnt (0.142308)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               jca (0.11396)

	1067-1402, + strand, RNAz p=0.99982
	1079-1209, - strand, RNAz p=0.962129
	1279-1446, - strand, RNAz p=0.967819

	1067-1195, BP433490 full-length enriched swine cDNA library, adult lung Sus (dbj\|BP433490.1\|), blast E-value=0, identity=100%
	1067-1381, DB812646 full-length enriched swine cDNA library, adult ovary Sus (dbj\|DB812646.1\|), blast E-value=0, identity=100%
	1067-1381, DB817818 full-length enriched swine cDNA library, adult testis Sus (dbj\|DB817818.1\|), blast E-value=0, identity=100%
	1067-1380, POSM0100003_A07 porcine skeletal muscle cDNA library (PoSM) Sus (gb\|BM190028.1\|), blast E-value=0, identity=99.04%
	1067-1300, 1437142 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DT883987.1\|), blast E-value=3e-29, identity=83.54%
	1067-1300, 1454867 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DT885826.1\|), blast E-value=3e-29, identity=83.54%

	160-945, gnl\|bosTau2\|chr17 (38453727-38454521)

	962-1470, gnl\|bosTau2\|chr17 (38454561-38455069)
	962-1470, gnl\|canFam2\|chr26 (19183421-19183937)
	962-1470, gnl\|dasNov1\|scaffold_1641 (101546-102117)
	962-1470, gnl\|echTel1\|scaffold_160701 (3879-4328)
	962-1470, gnl\|hg17\|chr12 (119110950-119111434)
	962-1470, gnl\|Hg17\|chr12 (119111448-119110970)
	962-1470, gnl\|loxAfr1\|scaffold_2359 (80907-81396)
	962-1470, gnl\|mm7\|chr5 (114776856-114776361)
	962-1470, gnl\|Mm7\|chr5 (114776345-114776834)
	962-1470, gnl\|monDom2\|scaffold_101 (63121-62710)
	962-1470, gnl\|oryCun1\|scaffold_160289 (3647-4157)
	962-1470, gnl\|panTro1\|chr10 (122111479-122111965)
	962-1470, gnl\|rheMac2\|chr11 (121212155-121212641)
	962-1470, gnl\|rn3\|chr12 (42185561-42186080)

	cov (0.396458)
	fcc (0.197785)
	duo (0.172801)
	lnt (0.142308)
	ese (0.126502)
	eep (0.122564)
	jca (0.11396)