Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-cq-c-07-0-UNL.s1.3

Sequence:


               
               GCTGCGCATGAAGTTGACGCACAGGCTGGTGTAGTAGGTGGGGTAGTCGCGGAGGTGGCT
GACGTGTGCGGACGACACGAAGTCCACGGAGCGCACCAGGACCCGGTGTGCCAGGCGTGC
CTCCACCATGCGCTCCACATCCCTGGCCAGGACCACCTCATCGGCCCTTGAGTAGAGGTA
GAGCTCGGGCCAGCGAGAGGCTGCGTTGAGCAGCCTGTCGTAGAAGTGGGTGTGGAAGAG
GGCCGTGAGCGGGGCCAGCAGGCCGTGGACCAGGACGGCCACCAGGGCGAAGGCCGCGAG
GAGCAGGAGGCGCAGCGCGGCGGGCCGGTGCCCCAGGACGGCTGCCAGGGCCCGCAGAGC
CCCCAGCAGGTTGCTGTCACCTGGACCGCTGTCGAAGATGGTGCCCACCACCCGCAGGTG
GCAGAAGCGCCGCTGGGTCTGCAGGAGCTCCAGCACGTGCCGGTACAGCATGACGCCGGC
GTTGCTGAAGACGTGGAAGAGCAGGGGCTCCTTCTCGACCTCATAATCAAAGAGCAGCTC
CAGCAGCTTCTGGGCCAAGACACGAAGGGAAGGGATGCCCAGGGACTCGGAGAAGAAGAC
CATGTGCCAAGGGGCTGTGTATCGGATCACGATGCAGCCCCTTTTGTGGTAGATGGCGCT
GTACTTGGCCAGGTTCTTGTCAGTGCAGCCACCCCAGCCCAAGAGAATCACCAAAGGCTG
TCGAGTCCCTGCCTCCTTCCCGCCTTGGTTGGGGCTATCCTCCTGGCTCCGGCAGGACTG
ATCCGGGATCTCGATGGTGTAGTCCAGCTGGGCCGAGGCCATCGTGAAGCCGCGGGCCCT
CAGCTCGGGCCTCTCGCCGGAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGCGCATGAAGTTGACGCACAGGCTGGTGTAGTAGGTGGGGTAGTCGCGGAGGTGGCT
GACGTGTGCGGACGACACGAAGTCCACGGAGCGCACCAGGACCCGGTGTGCCAGGCGTGC
CTCCACCATGCGCTCCACATCCCTGGCCAGGACCACCTCATCGGCCCTTGAGTAGAGGTA
GAGCTCGGGCCAGCGAGAGGCTGCGTTGAGCAGCCTGTCGTAGAAGTGGGTGTGGAAGAG
GGCCGTGAGCGGGGCCAGCAGGCCGTGGACCAGGACGGCCACCAGGGCGAAGGCCGCGAG
GAGCAGGAGGCGCAGCGCGGCGGGCCGGTGCCCCAGGACGGCTGCCAGGGCCCGCAGAGC
CCCCAGCAGGTTGCTGTCACCTGGACCGCTGTCGAAGATGGTGCCCACCACCCGCAGGTG
GCAGAAGCGCCGCTGGGTCTGCAGGAGCTCCAGCACGTGCCGGTACAGCATGACGCCGGC
GTTGCTGAAGACGTGGAAGAGCAGGGGCTCCTTCTCGACCTCATAATCAAAGAGCAGCTC
CAGCAGCTTCTGGGCCAAGACACGAAGGGAAGGGATGCCCAGGGACTCGGAGAAGAAGAC
CATGTGCCAAGGGGCTGTGTATCGGATCACGATGCAGCCCCTTTTGTGGTAGATGGCGCT
GTACTTGGCCAGGTTCTTGTCAGTGCAGCCACCCCAGCCCAAGAGAATCACCAAAGGCTG
TCGAGTCCCTGCCTCCTTCCCGCCTTGGTTGGGGCTATCCTCCTGGCTCCGGCAGGACTG
ATCCGGGATCTCGATGGTGTAGTCCAGCTGGGCCGAGGCCATCGTGAAGCCGCGGGCCCT
CAGCTCGGGCCTCTCGCCGGAACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6IA07_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6IA07_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-239, + strand, RNAz p=0.897185

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-239, + strand, RNAz p=0.897185

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-640, gnl|bosTau2|chr3 (70528335-70527696)
               

               
               1-640, gnl|Hg17|chr1 (44789339-44789975)
               

               
               1-640, gnl|Mm7|chr4 (116644967-116644328)
               


               
               762-864, gnl|bosTau2|chr3 (70513043-70512941)
               

               
               762-864, gnl|Hg17|chr1 (44809096-44809198)
               

               
               762-864, gnl|Mm7|chr4 (116628573-116628471)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-640, gnl|bosTau2|chr3 (70528335-70527696)
               

               
               1-640, gnl|Hg17|chr1 (44789339-44789975)
               

               
               1-640, gnl|Mm7|chr4 (116644967-116644328)
               


               
               762-864, gnl|bosTau2|chr3 (70513043-70512941)
               

               
               762-864, gnl|Hg17|chr1 (44809096-44809198)
               

               
               762-864, gnl|Mm7|chr4 (116628573-116628471)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	1-640, gnl\|bosTau2\|chr3 (70528335-70527696)
	1-640, gnl\|Hg17\|chr1 (44789339-44789975)
	1-640, gnl\|Mm7\|chr4 (116644967-116644328)

	762-864, gnl\|bosTau2\|chr3 (70513043-70512941)
	762-864, gnl\|Hg17\|chr1 (44809096-44809198)
	762-864, gnl\|Mm7\|chr4 (116628573-116628471)