Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-cu-a-05-0-UNL.s2.3

Sequence:


               
               TGTTCATAGCAGTTTCCACCTTGCTTGAGTCTAATGGTTTTCCTGGAAATGCTAAGAAAA
TGTCTAGGTTGCTTCCAATTCTGGACACCTTCATTAGACTCTTGGGGGACCCTTACAAGG
GAGCCACTTTAGAAAAGCACTTTAAGTAGATAATGGCCTTTGGATGGGGTCACCGGCATG
CCCGGTGAGTGCTTCTCAGTGGTCCCTGAGGACCAATGACTGAGTGTCTCCCAGCCTGTG
TTGAATTCCTTGCATTTTAAATTGATACAGCAGTTATTAGAGAGCTTCTAACTTCTCTAA
TGAAAGGTATCTTCACATGTATCACACCTTTCTTAGCTCCTGTGTCTACCTTGTGTTACC
ACACAGAATATCATCAATAATATGGTCTGTATGCTATTGTGTAGGCACGTATGGTCTAAA
ACCAGTCCAGGGATTCTCCAGGTTGAGAACATGTCCCAAACAACATGTTCAGAGCATCTC
CCAGTTTTTCTGACTCCCTTCTTGAAGTGATTTCAGTTCCCATTTTTTCTATTGTTTCCT
GAACTTGACCTCGATATAACCTGGGTGTGATAGGTTGAAACTTTGCTAAGAAGGGTCTAG
CAAGCTAAGGTTCATTTTCTGAAACTCACTGTTGCAAACTGACCTTTTTAGTCTCACAAT
TGTATCTACACAAAGTCATTTGTGAAAGGAGCCTGTACTAGAGAAGAAATCCCTTTCAGT
GGAGTCGGCTGCTAGCGGACTCTCCTGTATGTAAGCCTATACCGGATTGAAGCCTGCGGT
TTCTGTTGTACGTTTGAAGTGAATGGAAGAGTGTTTTTTGAAAGGTTTATCTCGTGTGGA
TTGATACTGAAATGGAAGGCATAACTTGGGATCATGAACTGTCACCTGCTCCTCCTTTGT
TCTCCACCCCATGAAATGTATGTGTGTTTCAATAAAGCTTTCTCCCTTGTCAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTCATAGCAGTTTCCACCTTGCTTGAGTCTAATGGTTTTCCTGGAAATGCTAAGAAAA
TGTCTAGGTTGCTTCCAATTCTGGACACCTTCATTAGACTCTTGGGGGACCCTTACAAGG
GAGCCACTTTAGAAAAGCACTTTAAGTAGATAATGGCCTTTGGATGGGGTCACCGGCATG
CCCGGTGAGTGCTTCTCAGTGGTCCCTGAGGACCAATGACTGAGTGTCTCCCAGCCTGTG
TTGAATTCCTTGCATTTTAAATTGATACAGCAGTTATTAGAGAGCTTCTAACTTCTCTAA
TGAAAGGTATCTTCACATGTATCACACCTTTCTTAGCTCCTGTGTCTACCTTGTGTTACC
ACACAGAATATCATCAATAATATGGTCTGTATGCTATTGTGTAGGCACGTATGGTCTAAA
ACCAGTCCAGGGATTCTCCAGGTTGAGAACATGTCCCAAACAACATGTTCAGAGCATCTC
CCAGTTTTTCTGACTCCCTTCTTGAAGTGATTTCAGTTCCCATTTTTTCTATTGTTTCCT
GAACTTGACCTCGATATAACCTGGGTGTGATAGGTTGAAACTTTGCTAAGAAGGGTCTAG
CAAGCTAAGGTTCATTTTCTGAAACTCACTGTTGCAAACTGACCTTTTTAGTCTCACAAT
TGTATCTACACAAAGTCATTTGTGAAAGGAGCCTGTACTAGAGAAGAAATCCCTTTCAGT
GGAGTCGGCTGCTAGCGGACTCTCCTGTATGTAAGCCTATACCGGATTGAAGCCTGCGGT
TTCTGTTGTACGTTTGAAGTGAATGGAAGAGTGTTTTTTGAAAGGTTTATCTCGTGTGGA
TTGATACTGAAATGGAAGGCATAACTTGGGATCATGAACTGTCACCTGCTCCTCCTTTGT
TCTCCACCCCATGAAATGTATGTGTGTTTCAATAAAGCTTTCTCCCTTGTCAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               151-261, - strand, RNAz p=0.647324

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               151-261, - strand, RNAz p=0.647324

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-290, gnl|bosTau2|chrX (26659496-26659208)
               

               
               1-290, gnl|Hg17|chrX (99736613-99736312)
               

               
               1-290, gnl|Mm7|chrX (128656553-128656256)
               


               
               402-960, gnl|bosTau2|chr22 (33385262-33385806)
               

               
               402-960, gnl|Hg17|chrX (99736183-99735633)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-290, gnl|bosTau2|chrX (26659496-26659208)
               

               
               1-290, gnl|Hg17|chrX (99736613-99736312)
               

               
               1-290, gnl|Mm7|chrX (128656553-128656256)
               


               
               402-960, gnl|bosTau2|chr22 (33385262-33385806)
               

               
               402-960, gnl|Hg17|chrX (99736183-99735633)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ova (0.387397)
               

               
               mgm (0.180343)
               

               
               lun (0.150489)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.387397)
               

               
               mgm (0.180343)
               

               
               lun (0.150489)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)

	1-290, gnl\|bosTau2\|chrX (26659496-26659208)
	1-290, gnl\|Hg17\|chrX (99736613-99736312)
	1-290, gnl\|Mm7\|chrX (128656553-128656256)

	402-960, gnl\|bosTau2\|chr22 (33385262-33385806)
	402-960, gnl\|Hg17\|chrX (99736183-99735633)

	ova (0.387397)
	mgm (0.180343)
	lun (0.150489)
	lyg (0.133103)
	sug (0.127291)