Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-cv-h-07-0-UNL.s1.3

Sequence:


               
               AAATGCAAGTGGATGTGAGCACTCTGGGGCCTGGCTTAACGTGGCAAAGTTCTTCCGACG
ACTTGGGAGCAAAGTGGCTGAGCTTGAGCTACTCTGTGTCGTTCATTTTTTAAGTTTGCA
CATAGGTTCCACTCCGAGTACCGTCTTTTAAGAGACCAAGGCACATGCACAGCTTTTAGA
AAGCGTCCCAACCACTGTGCCTGTGTGGGTACTGTGGGAACCTTTCTGTAAATAGGATGG
AAGTGGTTGTTGCAAACAGCCTCCTTGTTTACAGAGAATACAGGGCCAGTAAGCAAGGGT
CAGTATTGTAACTACACGTCTCCACTTAAGCACAATGATGTAAGTGGTTTTGTTTGAAAA
CTACAGCTATGTAGCACTTGGGACGACACTGCACCTGTGCAGAAAAGGGACATTGCCAAG
GAGCAAAAACAAAATGTGAAATGAGTCATTTGGAAACAAGGTGGGGGTGTGAGGGCAACC
TCGAGGATTTACGGCAGTGAAACTTTCCCCAGTAGTTCTTGGAAAAGCTGACCGCAGAAT
TTGGTAGTATGTACACTTAGCATTTGTGAGTGTGTGTGTGTGTGTTTTTAAACCAAAAAC
TAACAGTGTTGCAACATTGTTGAAAGGGCTCGTGTTTTTCAGTGGTCGCCCATTGTACTC
CATGCCACTCACCTCCACTGCACTGAGGAGTTCTAAAGCAAGGAGAGGGAGCAGGCTCCG
TTAGCTGCGACAGCATTCTGCCCAGACACTTGATCTCAAAGTAGCTTCCTTTTCTTTATT
TTTTCATACTAAATGTATCTGATAGTGGACATGTTGGCTATAGTTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATGCAAGTGGATGTGAGCACTCTGGGGCCTGGCTTAACGTGGCAAAGTTCTTCCGACG
ACTTGGGAGCAAAGTGGCTGAGCTTGAGCTACTCTGTGTCGTTCATTTTTTAAGTTTGCA
CATAGGTTCCACTCCGAGTACCGTCTTTTAAGAGACCAAGGCACATGCACAGCTTTTAGA
AAGCGTCCCAACCACTGTGCCTGTGTGGGTACTGTGGGAACCTTTCTGTAAATAGGATGG
AAGTGGTTGTTGCAAACAGCCTCCTTGTTTACAGAGAATACAGGGCCAGTAAGCAAGGGT
CAGTATTGTAACTACACGTCTCCACTTAAGCACAATGATGTAAGTGGTTTTGTTTGAAAA
CTACAGCTATGTAGCACTTGGGACGACACTGCACCTGTGCAGAAAAGGGACATTGCCAAG
GAGCAAAAACAAAATGTGAAATGAGTCATTTGGAAACAAGGTGGGGGTGTGAGGGCAACC
TCGAGGATTTACGGCAGTGAAACTTTCCCCAGTAGTTCTTGGAAAAGCTGACCGCAGAAT
TTGGTAGTATGTACACTTAGCATTTGTGAGTGTGTGTGTGTGTGTTTTTAAACCAAAAAC
TAACAGTGTTGCAACATTGTTGAAAGGGCTCGTGTTTTTCAGTGGTCGCCCATTGTACTC
CATGCCACTCACCTCCACTGCACTGAGGAGTTCTAAAGCAAGGAGAGGGAGCAGGCTCCG
TTAGCTGCGACAGCATTCTGCCCAGACACTTGATCTCAAAGTAGCTTCCTTTTCTTTATT
TTTTCATACTAAATGTATCTGATAGTGGACATGTTGGCTATAGTTAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-276, + strand, RNAz p=0.972366

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-276, + strand, RNAz p=0.972366

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_005761, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_005761, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-828, gnl|bosTau2|chr5 (15194723-15195548)
               

               
               1-828, gnl|Hg17|chr12 (93201512-93202329)
               

               
               1-828, gnl|Mm7|chr10 (94353913-94353106)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-828, gnl|bosTau2|chr5 (15194723-15195548)
               

               
               1-828, gnl|Hg17|chr12 (93201512-93202329)
               

               
               1-828, gnl|Mm7|chr10 (94353913-94353106)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ece (0.229305)
               

               
               cki (0.165235)
               

               
               spl (0.143184)
               

               
               cbl (0.114797)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               cki (0.165235)
               

               
               spl (0.143184)
               

               
               cbl (0.114797)

	1-828, gnl\|bosTau2\|chr5 (15194723-15195548)
	1-828, gnl\|Hg17\|chr12 (93201512-93202329)
	1-828, gnl\|Mm7\|chr10 (94353913-94353106)