Ss1.1-uFN-UNL-P-FN-cy-b-09-0-UNL.s1.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCGGGCGACATGTTCCGGGTGCCGGAGACCGAGGGTGGCCGGGCTGGCTCCAGGGCCAT GAAGCCCCCGAGAGGAGACTCAAGCAGTCTGTTTGGAAGTCCAGAAGAAGCTGTCCCTTC AAGCAGGCCCAATAGGATGGCATCTAACATTTTTGGACCAACTGAAGAGCCTCAGAATGT ACCTAAAAGGACCAATCCCCCTGGGGGCAAAGGAAGTGGTATCTTTGACGAATCAATGCC TGTGCAGACTCGACAGCGTCTGAACCCCCCTGGCGGGAAGACCAGTGACATCTTTGGGTC CCCGGTCACTGCTGCCTCGCCCCTGGCACACCCAAACAAGCCCAAGGACCACGTGCTCCT GCGTGAGGGGGAGGAGCCCGCCCCGGACCTCAAAGCCGCAGCGAGCGCCTCGCCCAGACA GGAGCCCGGCGAGCAAGGCGGCCCGAGGGAGGCGGCCTGTGCCCAGGAGCCCGCGCCCCC GCTGGACAGCCACGAGCCCAGGCTGGGCCCGCGGCCGCGCTCTCACAACAAAGTCCTGAA CCCACCTGGGGGCAAGTCCAGCATCTCCTTCTACTGAGGCACCGCCGCATCCCTCACCGC CAGACAAGCCCGGGAGATAGTTTAGATAGAGTTTCTTTCAGCCCAGAGAAGCGGGGTGGG GAGCGGGTCTGGGGGAGCCCGCGGCCTGGCCCCACAGCCGTCCTGAGGCCTTGGCCTTCC AGGTGCCCGGGGTCGCGGCGCCCGTGGGAGAGGCCCCTCTGGTGGCCCGGGGAGCGGGGT CTTCTCGTCTTTGGTATGTTGGCTCATTGGGCGTCCAGGTGTCGCTGACAGAGTAGCAGT TAGAGCCTCTGGGGGGAAAAGGAAACCCTGGTGGGTTCCTGCGGGACGGAGGGGCCAATG TGGACCCCCTCGCGCGGGGGTCTCTGTGGAGACCCTCGGATCCCCGGGCTGCGACCTCCG GGCCCACGGCCTCCACTCCCAGGAACTCAGTTTCTCTCTTGAGTTCCACACATGTTCCTG AAATACCCTGATTGCTTTTCCTCCGTGGCTGTGGGCAGAACACCGGAGCGCCGTTCTCGG TCTTAGGCTTGATGGAAAGATTCCGTAGCCGGGTCTTCCAAGGAGCCCCTCGTTGCCATG TCAAACCCTGGCCACGTCTTACCTGGGAATCACCACCTGTCATCCATCAGAGACTAGTTT CGGACTCTTTCCAGGCGGTTTTGCCTGTGAATTGTCCCCTTCTTTCGCATCGGCCTTGGG CCTAGGCCCTTGCTCCCCACCACTACTGCGGACGCTCCCCCACCAGCCCCACTGCTTGTC TGCAAGGCCGCTCAGCTCAGCAGGCCTTTAAGCCACTGACATACGTCCAGGTAACGGGAT TATCCTTGCTCTGTCTTTTTTATAGTCCTGTTGACAGTAGGAAAGAGAGATCCTCAAGAA CCTTGGGTTCTTGGGTTTGAATTCAACCCTTGAGAACCTTGGGTTCTTCGGGCTGAATTC CTGGCTCACGTCCACAGAGCTGTTCTGAAGCAGCAGCTTTACATAAGTGACTATGGACGC CGGTCTGTGTGTGACATCTTTCTAGACACAAGCCCACCACTCACGTCCAGCACAGGGGAA AGGAGGTGTCTTAGCACCCACGATACGGCTTTGCAGAAACTCTGGCCGTACAGTTTCTGA TGAGGCCTGGAGACCTTAGGCCTGGAGGTTCGGTAGTTTGGCAGCAAGGTGGTCACGAGC CCCTCTCGCGACGCTTGCCCGCGGAGATAACCTTTGATCTGTCAGGTGACACTTCTCCCC CCTGTGCCTCTCACGGGCTGCGGCATCAAGTCCTCTGCTTCTCTCCTGAGGGGCCAGCAG GCAACGGGGAGGTCTGGGCGGTGGGGCTCTTGCTGCCTCCAGAGCTAACAGGTGCCAGAA CAATCCTCATTATCAAGATTCGGTTCCACTCCCAGTGGCCTGGACACTCAAGTGCCTGCA GGAGCCACCTGCCGAGCTCCACTTCTTCCACCAGCACCCCAGGGGTCTACACGGCACTCC GCCAACCAAAGACAGACTCACTTCCAGTTGCCCTGCTGACTTAGGAGCCAAGAAGCACTC TGTGTGACTCAAATACCTCCTGTCTCCATTCTTTAAATGCTTATTTGTAAAGAAGTCTGG AATTCAGAACGGTTTCTCCCCATTAAAAAAATGTCATGAATGGTGGTTAGCTTTTAAGCT CAAATGTACTAATTTAACTGACAATGAGATGTTCCAGCGGTGGAAGTGGACAGGCGTTTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCGGGCGACATGTTCCGGGTGCCGGAGACCGAGGGTGGCCGGGCTGGCTCCAGGGCCAT GAAGCCCCCGAGAGGAGACTCAAGCAGTCTGTTTGGAAGTCCAGAAGAAGCTGTCCCTTC AAGCAGGCCCAATAGGATGGCATCTAACATTTTTGGACCAACTGAAGAGCCTCAGAATGT ACCTAAAAGGACCAATCCCCCTGGGGGCAAAGGAAGTGGTATCTTTGACGAATCAATGCC TGTGCAGACTCGACAGCGTCTGAACCCCCCTGGCGGGAAGACCAGTGACATCTTTGGGTC CCCGGTCACTGCTGCCTCGCCCCTGGCACACCCAAACAAGCCCAAGGACCACGTGCTCCT GCGTGAGGGGGAGGAGCCCGCCCCGGACCTCAAAGCCGCAGCGAGCGCCTCGCCCAGACA GGAGCCCGGCGAGCAAGGCGGCCCGAGGGAGGCGGCCTGTGCCCAGGAGCCCGCGCCCCC GCTGGACAGCCACGAGCCCAGGCTGGGCCCGCGGCCGCGCTCTCACAACAAAGTCCTGAA CCCACCTGGGGGCAAGTCCAGCATCTCCTTCTACTGAGGCACCGCCGCATCCCTCACCGC CAGACAAGCCCGGGAGATAGTTTAGATAGAGTTTCTTTCAGCCCAGAGAAGCGGGGTGGG GAGCGGGTCTGGGGGAGCCCGCGGCCTGGCCCCACAGCCGTCCTGAGGCCTTGGCCTTCC AGGTGCCCGGGGTCGCGGCGCCCGTGGGAGAGGCCCCTCTGGTGGCCCGGGGAGCGGGGT CTTCTCGTCTTTGGTATGTTGGCTCATTGGGCGTCCAGGTGTCGCTGACAGAGTAGCAGT TAGAGCCTCTGGGGGGAAAAGGAAACCCTGGTGGGTTCCTGCGGGACGGAGGGGCCAATG TGGACCCCCTCGCGCGGGGGTCTCTGTGGAGACCCTCGGATCCCCGGGCTGCGACCTCCG GGCCCACGGCCTCCACTCCCAGGAACTCAGTTTCTCTCTTGAGTTCCACACATGTTCCTG AAATACCCTGATTGCTTTTCCTCCGTGGCTGTGGGCAGAACACCGGAGCGCCGTTCTCGG TCTTAGGCTTGATGGAAAGATTCCGTAGCCGGGTCTTCCAAGGAGCCCCTCGTTGCCATG TCAAACCCTGGCCACGTCTTACCTGGGAATCACCACCTGTCATCCATCAGAGACTAGTTT CGGACTCTTTCCAGGCGGTTTTGCCTGTGAATTGTCCCCTTCTTTCGCATCGGCCTTGGG CCTAGGCCCTTGCTCCCCACCACTACTGCGGACGCTCCCCCACCAGCCCCACTGCTTGTC TGCAAGGCCGCTCAGCTCAGCAGGCCTTTAAGCCACTGACATACGTCCAGGTAACGGGAT TATCCTTGCTCTGTCTTTTTTATAGTCCTGTTGACAGTAGGAAAGAGAGATCCTCAAGAA CCTTGGGTTCTTGGGTTTGAATTCAACCCTTGAGAACCTTGGGTTCTTCGGGCTGAATTC CTGGCTCACGTCCACAGAGCTGTTCTGAAGCAGCAGCTTTACATAAGTGACTATGGACGC CGGTCTGTGTGTGACATCTTTCTAGACACAAGCCCACCACTCACGTCCAGCACAGGGGAA AGGAGGTGTCTTAGCACCCACGATACGGCTTTGCAGAAACTCTGGCCGTACAGTTTCTGA TGAGGCCTGGAGACCTTAGGCCTGGAGGTTCGGTAGTTTGGCAGCAAGGTGGTCACGAGC CCCTCTCGCGACGCTTGCCCGCGGAGATAACCTTTGATCTGTCAGGTGACACTTCTCCCC CCTGTGCCTCTCACGGGCTGCGGCATCAAGTCCTCTGCTTCTCTCCTGAGGGGCCAGCAG GCAACGGGGAGGTCTGGGCGGTGGGGCTCTTGCTGCCTCCAGAGCTAACAGGTGCCAGAA CAATCCTCATTATCAAGATTCGGTTCCACTCCCAGTGGCCTGGACACTCAAGTGCCTGCA GGAGCCACCTGCCGAGCTCCACTTCTTCCACCAGCACCCCAGGGGTCTACACGGCACTCC GCCAACCAAAGACAGACTCACTTCCAGTTGCCCTGCTGACTTAGGAGCCAAGAAGCACTC TGTGTGACTCAAATACCTCCTGTCTCCATTCTTTAAATGCTTATTTGTAAAGAAGTCTGG AATTCAGAACGGTTTCTCCCCATTAAAAAAATGTCATGAATGGTGGTTAGCTTTTAAGCT CAAATGTACTAATTTAACTGACAATGAGATGTTCCAGCGGTGGAAGTGGACAGGCGTTTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 465-618, - strand, RNAz p=0.865341 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 465-618, - strand, RNAz p=0.865341 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 203-347, gnl|bosTau2|chr25 (3347319-3347175) | |
| 203-347, gnl|canFam2|chr6 (42231894-42231788) | |
| 203-347, gnl|dasNov1|scaffold_17635 (51357-51250) | |
| 203-347, gnl|echTel1|scaffold_166986 (3474-3583) | |
| 203-347, gnl|galGal2|chr14 (20581824-20581930) | |
| 203-347, gnl|hg17|chr16 (1681845-1681951) | |
| 203-347, gnl|Hg17|chr16 (1681844-1681988) | |
| 203-347, gnl|loxAfr1|scaffold_90778 (6391-6497) | |
| 203-347, gnl|mm7|chr17 (23131931-23131825) | |
| 203-347, gnl|Mm7|chr17 (23131930-23131786) | |
| 203-347, gnl|monDom2|scaffold_5 (122115680-122115574) | |
| 203-347, gnl|oryCun1|scaffold_162827 (1224-1331) | |
| 203-347, gnl|panTro1|chr18 (1753634-1753740) | |
| 203-347, gnl|rheMac2|chr20 (1681756-1681862) | |
| 203-347, gnl|rn3|chr10 (14197877-14197771) | |
| 203-347, gnl|tetNig1|chrUn_random (39390335-39390441) | |
| 398-674, gnl|bosTau2|chr25 (3344222-3343940) | |
| 398-674, gnl|Hg17|chr16 (1688809-1689109) | |
| 398-674, gnl|Mm7|chr17 (23127831-23127528) | |
| 1134-1464, gnl|bosTau2|chr25 (3343512-3343183) | |
| 1134-1464, gnl|Hg17|chr16 (1689637-1689989) | |
| 1134-1464, gnl|Mm7|chr17 (23127001-23126682) | |
| 1471-1768, gnl|bosTau2|chr25 (3343212-3342909) | |
| 1471-1768, gnl|Hg17|chr16 (1689960-1690270) | |
| 1772-2271, gnl|bosTau2|chr25 (3342884-3342378) | |
| 1772-2271, gnl|Mm7|chr17 (23126452-23125940) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 203-347, gnl|bosTau2|chr25 (3347319-3347175) | |
| 203-347, gnl|canFam2|chr6 (42231894-42231788) | |
| 203-347, gnl|dasNov1|scaffold_17635 (51357-51250) | |
| 203-347, gnl|echTel1|scaffold_166986 (3474-3583) | |
| 203-347, gnl|galGal2|chr14 (20581824-20581930) | |
| 203-347, gnl|hg17|chr16 (1681845-1681951) | |
| 203-347, gnl|Hg17|chr16 (1681844-1681988) | |
| 203-347, gnl|loxAfr1|scaffold_90778 (6391-6497) | |
| 203-347, gnl|mm7|chr17 (23131931-23131825) | |
| 203-347, gnl|Mm7|chr17 (23131930-23131786) | |
| 203-347, gnl|monDom2|scaffold_5 (122115680-122115574) | |
| 203-347, gnl|oryCun1|scaffold_162827 (1224-1331) | |
| 203-347, gnl|panTro1|chr18 (1753634-1753740) | |
| 203-347, gnl|rheMac2|chr20 (1681756-1681862) | |
| 203-347, gnl|rn3|chr10 (14197877-14197771) | |
| 203-347, gnl|tetNig1|chrUn_random (39390335-39390441) | |
| 398-674, gnl|bosTau2|chr25 (3344222-3343940) | |
| 398-674, gnl|Hg17|chr16 (1688809-1689109) | |
| 398-674, gnl|Mm7|chr17 (23127831-23127528) | |
| 1134-1464, gnl|bosTau2|chr25 (3343512-3343183) | |
| 1134-1464, gnl|Hg17|chr16 (1689637-1689989) | |
| 1134-1464, gnl|Mm7|chr17 (23127001-23126682) | |
| 1471-1768, gnl|bosTau2|chr25 (3343212-3342909) | |
| 1471-1768, gnl|Hg17|chr16 (1689960-1690270) | |
| 1772-2271, gnl|bosTau2|chr25 (3342884-3342378) | |
| 1772-2271, gnl|Mm7|chr17 (23126452-23125940) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| mcp (0.341297) | |
| nje (0.33184) | |
| eep (0.245128) | |
| ece (0.229305) | |
| eye (0.170503) | |
| cki (0.165235) | |
| csp (0.161186) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jca (0.11396) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mcp (0.341297) | |
| nje (0.33184) | |
| eep (0.245128) | |
| ece (0.229305) | |
| eye (0.170503) | |
| cki (0.165235) | |
| csp (0.161186) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jca (0.11396) | |
| cty (0.10408) | |
| eje (0.0988338) |