Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-cy-d-05-0-UNL.s1.3

Sequence:


               
               CCAAACTTTCCCCCCAAATCTGTGTTCTCTTCCTCATGAAACCGAATCCTCCGGCTGTGG
CGTCCCAGGCGCCCGCCCCTCTCCCGCTGCCTCCCCCGGCGCCCCTGCCCTCGCCCTGCG
CTGTCCGAGCGCCTCGGACCAGCTTTCCGCAGAACCTCGACCCCCACCGCTTGCCCTGAA
AATGAAGGTTTGGCTGCTGCTGGGTCTCCTGCTTGTGCACGAAGCGCTGGAGGATGTTAC
AGGCCAGCATCCTCCCAAGAACAAGCGCCCAAAGGAGCCAGGAGAGAACAAAATCAAGCC
TACTAACAAAAAGGTGAAGCCCAAAATTCCTAAAATAAAGGACAGAGACTCAGCTGATTC
CGTGCCGAAGACACAGTCTATAATGATACAAATGATGGATAAAGGTCGCTTCCAGAAACC
CGCTGCTACCCTGAGTCTGACGGCAGGGCAAACCCTGGAGCTTCGATGTAAAGGGAATAA
AATTGCATGGAGCTATCCTGCTTACCTTGACACCTTTAAGGACACCCGCCTCAGTGTGAA
GCAGCATGAGCGCTACGGCCAGCTGACCCTGGTGAACTCCACCGCGGCGGACACAGGAGA
ATTCAGCTGCTGGGGGCAGCTCTGCAACGGCTACATCTGCAGGAGGGACGAAGCCAAGAC
GGGCTCCACCTACATCTTTTTTACAGAGAAAGGAGAACTCTTTGTACCTTCACCCAGTCA
CTTTGATGTTGTCTACTTGAACCCCGACAAACAGGCGGTGGTTCCTTGTCGAGTGACGGT
CCTGTCGGCCAAAGTCACGCTCCACAGGGAGTTCCCAGCCAAGGAAATCCCCGCCAACGG
AACAGACATTGTTTATGACGTGAAGAGAGGTTTTGTGTATCTGCAGCCTCACTCTGACCA
CCAGGGGGTGGTCTACTGCAAGGCAGAGGCCGGGGGCAAGTCCCAGATCTCGGTCAAGTA
CCAGCTGCTCTATGCAGAAGTTCCCAGCGGCCCTCCGTCAACAACCATCTTAGCATCGGC
GAACAAAGTGAAAGGTGGGGATGACATCAGCGTCCTCTGCACTGTCCTTGGGGAGCCGGA
CGTGGAGGTGGAATTCAGGTGGATCTACCCCGGGCTGAAGGATGAAAGGCCCGTGACGAT
TCAAGACGCTTGGCGGCTGATCCACCGGGGACTTGGACACACCACAAGGATCTCCCAGAG
CGTCCTGACAGTTGAAGACTTGGAGACCATTGACGCGGGTTATTACATTTGCACTGCTCA
GAATCTCCGAGGACAGACCACAGTAGCTACCACTGTTGAGTTTTCCTGATTTGGAAAATG
AAGTATGATGAACTTGCGGGAAAGCCAGTTCGTGTATGCAGCCGGCTCTGGGGCTCCTTT
GACCAGTGCATTGCCAGAGGCTGATGTCAAGTGCCAAACCCCGGGTCCTGTCTTGTGAGT
CAGACCCAGACCTCCAAACTAAAAGGAAGTCACCCGGTCTAATAATAGATGTGTTAACTC
CAAGAGAAAGCCTGTATTCTGATAGCCGACCTACGTATATGTGTTTCTAGTTTTCCACTA
AGAAGGCATATATGTAAACACCTTCGTATAATCATTTCTATTAAATGAGCAAGTTTTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAAACTTTCCCCCCAAATCTGTGTTCTCTTCCTCATGAAACCGAATCCTCCGGCTGTGG
CGTCCCAGGCGCCCGCCCCTCTCCCGCTGCCTCCCCCGGCGCCCCTGCCCTCGCCCTGCG
CTGTCCGAGCGCCTCGGACCAGCTTTCCGCAGAACCTCGACCCCCACCGCTTGCCCTGAA
AATGAAGGTTTGGCTGCTGCTGGGTCTCCTGCTTGTGCACGAAGCGCTGGAGGATGTTAC
AGGCCAGCATCCTCCCAAGAACAAGCGCCCAAAGGAGCCAGGAGAGAACAAAATCAAGCC
TACTAACAAAAAGGTGAAGCCCAAAATTCCTAAAATAAAGGACAGAGACTCAGCTGATTC
CGTGCCGAAGACACAGTCTATAATGATACAAATGATGGATAAAGGTCGCTTCCAGAAACC
CGCTGCTACCCTGAGTCTGACGGCAGGGCAAACCCTGGAGCTTCGATGTAAAGGGAATAA
AATTGCATGGAGCTATCCTGCTTACCTTGACACCTTTAAGGACACCCGCCTCAGTGTGAA
GCAGCATGAGCGCTACGGCCAGCTGACCCTGGTGAACTCCACCGCGGCGGACACAGGAGA
ATTCAGCTGCTGGGGGCAGCTCTGCAACGGCTACATCTGCAGGAGGGACGAAGCCAAGAC
GGGCTCCACCTACATCTTTTTTACAGAGAAAGGAGAACTCTTTGTACCTTCACCCAGTCA
CTTTGATGTTGTCTACTTGAACCCCGACAAACAGGCGGTGGTTCCTTGTCGAGTGACGGT
CCTGTCGGCCAAAGTCACGCTCCACAGGGAGTTCCCAGCCAAGGAAATCCCCGCCAACGG
AACAGACATTGTTTATGACGTGAAGAGAGGTTTTGTGTATCTGCAGCCTCACTCTGACCA
CCAGGGGGTGGTCTACTGCAAGGCAGAGGCCGGGGGCAAGTCCCAGATCTCGGTCAAGTA
CCAGCTGCTCTATGCAGAAGTTCCCAGCGGCCCTCCGTCAACAACCATCTTAGCATCGGC
GAACAAAGTGAAAGGTGGGGATGACATCAGCGTCCTCTGCACTGTCCTTGGGGAGCCGGA
CGTGGAGGTGGAATTCAGGTGGATCTACCCCGGGCTGAAGGATGAAAGGCCCGTGACGAT
TCAAGACGCTTGGCGGCTGATCCACCGGGGACTTGGACACACCACAAGGATCTCCCAGAG
CGTCCTGACAGTTGAAGACTTGGAGACCATTGACGCGGGTTATTACATTTGCACTGCTCA
GAATCTCCGAGGACAGACCACAGTAGCTACCACTGTTGAGTTTTCCTGATTTGGAAAATG
AAGTATGATGAACTTGCGGGAAAGCCAGTTCGTGTATGCAGCCGGCTCTGGGGCTCCTTT
GACCAGTGCATTGCCAGAGGCTGATGTCAAGTGCCAAACCCCGGGTCCTGTCTTGTGAGT
CAGACCCAGACCTCCAAACTAAAAGGAAGTCACCCGGTCTAATAATAGATGTGTTAACTC
CAAGAGAAAGCCTGTATTCTGATAGCCGACCTACGTATATGTGTTTCTAGTTTTCCACTA
AGAAGGCATATATGTAAACACCTTCGTATAATCATTTCTATTAAATGAGCAAGTTTTTGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|60650264|gb|AAX31364.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|60650264|gb|AAX31364.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               759-878, - strand, RNAz p=0.539445

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               759-878, - strand, RNAz p=0.539445

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               236-534, gnl|bosTau2|chr27 (11491432-11491134)
               

               
               236-534, gnl|Hg17|chr8 (17491236-17491534)
               

               
               236-534, gnl|Mm7|chr8 (39721777-39722075)
               


               
               680-978, gnl|bosTau2|chr27 (11436810-11436512)
               

               
               680-978, gnl|Hg17|chr8 (17530269-17530567)
               

               
               680-978, gnl|Mm7|chr8 (39769215-39769513)
               


               
               1119-1620, gnl|bosTau2|chr27 (11429820-11429336)
               

               
               1119-1620, gnl|Hg17|chr8 (17544400-17544896)
               

               
               1119-1620, gnl|Mm7|chr8 (39774001-39774456)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               236-534, gnl|bosTau2|chr27 (11491432-11491134)
               

               
               236-534, gnl|Hg17|chr8 (17491236-17491534)
               

               
               236-534, gnl|Mm7|chr8 (39721777-39722075)
               


               
               680-978, gnl|bosTau2|chr27 (11436810-11436512)
               

               
               680-978, gnl|Hg17|chr8 (17530269-17530567)
               

               
               680-978, gnl|Mm7|chr8 (39769215-39769513)
               


               
               1119-1620, gnl|bosTau2|chr27 (11429820-11429336)
               

               
               1119-1620, gnl|Hg17|chr8 (17544400-17544896)
               

               
               1119-1620, gnl|Mm7|chr8 (39774001-39774456)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               csk (0.562984)
               

               
               fat (0.442282)
               

               
               nep (0.36785)
               

               
               eye (0.341006)
               

               
               ova (0.258264)
               

               
               bla (0.248694)
               

               
               cbe (0.239234)
               

               
               med (0.232504)
               

               
               jca (0.22792)
               

               
               sin (0.174948)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.562984)
               

               
               fat (0.442282)
               

               
               nep (0.36785)
               

               
               eye (0.341006)
               

               
               ova (0.258264)
               

               
               bla (0.248694)
               

               
               cbe (0.239234)
               

               
               med (0.232504)
               

               
               jca (0.22792)
               

               
               sin (0.174948)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)

	236-534, gnl\|bosTau2\|chr27 (11491432-11491134)
	236-534, gnl\|Hg17\|chr8 (17491236-17491534)
	236-534, gnl\|Mm7\|chr8 (39721777-39722075)

	680-978, gnl\|bosTau2\|chr27 (11436810-11436512)
	680-978, gnl\|Hg17\|chr8 (17530269-17530567)
	680-978, gnl\|Mm7\|chr8 (39769215-39769513)

	1119-1620, gnl\|bosTau2\|chr27 (11429820-11429336)
	1119-1620, gnl\|Hg17\|chr8 (17544400-17544896)
	1119-1620, gnl\|Mm7\|chr8 (39774001-39774456)

	csk (0.562984)
	fat (0.442282)
	nep (0.36785)
	eye (0.341006)
	ova (0.258264)
	bla (0.248694)
	cbe (0.239234)
	med (0.232504)
	jca (0.22792)
	sin (0.174948)
	mga (0.160205)
	ski (0.146735)
	lin (0.145603)
	cst (0.140036)
	che (0.136314)
	ste (0.135208)
	nmm (0.132802)
	ret (0.128733)
	eep (0.122564)
	pgl (0.118483)