Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-cz-c-05-0-UNL.s1.3

Sequence:


               
               CGCCGTGCCGCTGCCGTCCCCGTCCCCGGAGTCACAGTCACTGTCGCCTCCGCCCCCGTC
TCGTTCCCTCCAAGGCGCGGAGCCCAGCGACCTCCGCGCGGGCGCCAGGGCGCGCAGACA
TGGGCAGCCGCTCCAGAGCGCGCCAGGTGGCCGCGGCGCTGGGCTTCGTTGGGCTGCTCT
TAGCTGCACTGGGCGCTGTTATGATCGTGATGGTGCCCTCGATCATCAAGCAGCAGGTCC
TCAAGAATGTGCGCATCGACCCCAGCAGCCTGTCCTTCAACATGTGGAAGGAGATCCCTG
TCCCTTTCTACCTCTCCGTCTACTTCTTTGATGTCATCAACCCCAACGAGATCCTCCAGG
GCCAGAAGCCACAGGTGCGGGAGCGCGGGCCCTACGTGTACAGGGAGTTCAGGCACAAGA
GCAACATCACCTTCAACGACAACGACACAGTGTCCTTCCTCGAGTACCGCAGTTACCAGT
TCCAGCCTCACAAGTCCCGCGGCCTGGAGAGTGACTACATCGTCATACCCAACATCCTGG
TCCTGAGCGCGTCAGTGATGATGGAGGATAGGCCCATGAGCCTGAAGCTGATCATGACCT
TTGCATTCAGTGCCCTTGGCGAGCGCGCCTTCGTGAACCGCACTGTTGGTGAGATTATGT
GGGGCTACGAGGGACCCCTCATACATCTCATCAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCCGTGCCGCTGCCGTCCCCGTCCCCGGAGTCACAGTCACTGTCGCCTCCGCCCCCGTC
TCGTTCCCTCCAAGGCGCGGAGCCCAGCGACCTCCGCGCGGGCGCCAGGGCGCGCAGACA
TGGGCAGCCGCTCCAGAGCGCGCCAGGTGGCCGCGGCGCTGGGCTTCGTTGGGCTGCTCT
TAGCTGCACTGGGCGCTGTTATGATCGTGATGGTGCCCTCGATCATCAAGCAGCAGGTCC
TCAAGAATGTGCGCATCGACCCCAGCAGCCTGTCCTTCAACATGTGGAAGGAGATCCCTG
TCCCTTTCTACCTCTCCGTCTACTTCTTTGATGTCATCAACCCCAACGAGATCCTCCAGG
GCCAGAAGCCACAGGTGCGGGAGCGCGGGCCCTACGTGTACAGGGAGTTCAGGCACAAGA
GCAACATCACCTTCAACGACAACGACACAGTGTCCTTCCTCGAGTACCGCAGTTACCAGT
TCCAGCCTCACAAGTCCCGCGGCCTGGAGAGTGACTACATCGTCATACCCAACATCCTGG
TCCTGAGCGCGTCAGTGATGATGGAGGATAGGCCCATGAGCCTGAAGCTGATCATGACCT
TTGCATTCAGTGCCCTTGGCGAGCGCGCCTTCGTGAACCGCACTGTTGGTGAGATTATGT
GGGGCTACGAGGGACCCCTCATACATCTCATCAATA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               99-218, - strand, RNAz p=0.665789

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               99-218, - strand, RNAz p=0.665789

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               104-212, + strand, RNAmicro p=0.985488

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               104-212, + strand, RNAmicro p=0.985488

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               3-245, gnl|bosTau2|chr17 (26053105-26052863)
               

               
               3-245, gnl|echTel1|scaffold_109575 (443-4)
               

               
               3-245, gnl|hg17|chr12 (123872998-123873462)
               

               
               3-245, gnl|Hg17|chr12 (123873287-123873021)
               

               
               3-245, gnl|mm7|chr5 (124574999-124575399)
               

               
               3-245, gnl|Mm7|chr5 (124575264-124575009)
               

               
               3-245, gnl|panTro1|chr10 (126950320-126950774)
               

               
               3-245, gnl|rheMac2|chr11 (126176703-126177178)
               

               
               3-245, gnl|rn3|chr12 (32253910-32253520)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-245, gnl|bosTau2|chr17 (26053105-26052863)
               

               
               3-245, gnl|echTel1|scaffold_109575 (443-4)
               

               
               3-245, gnl|hg17|chr12 (123872998-123873462)
               

               
               3-245, gnl|Hg17|chr12 (123873287-123873021)
               

               
               3-245, gnl|mm7|chr5 (124574999-124575399)
               

               
               3-245, gnl|Mm7|chr5 (124575264-124575009)
               

               
               3-245, gnl|panTro1|chr10 (126950320-126950774)
               

               
               3-245, gnl|rheMac2|chr11 (126176703-126177178)
               

               
               3-245, gnl|rn3|chr12 (32253910-32253520)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cov (0.132153)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)

	3-245, gnl\|bosTau2\|chr17 (26053105-26052863)
	3-245, gnl\|echTel1\|scaffold_109575 (443-4)
	3-245, gnl\|hg17\|chr12 (123872998-123873462)
	3-245, gnl\|Hg17\|chr12 (123873287-123873021)
	3-245, gnl\|mm7\|chr5 (124574999-124575399)
	3-245, gnl\|Mm7\|chr5 (124575264-124575009)
	3-245, gnl\|panTro1\|chr10 (126950320-126950774)
	3-245, gnl\|rheMac2\|chr11 (126176703-126177178)
	3-245, gnl\|rn3\|chr12 (32253910-32253520)