Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-cz-e-11-0-UNL.s1.3

Sequence:


               
               GGGACAGTCCCCAAGAGGCTCCAGCCGGGCCTCTGGGCCAAGTGAAACTGACTGTTTGGT
ACTACAGTGAAGAACGAAAGCTGGTCAGCATGGTCCACAGCTGCCGGGCCCTTCGACAGA
ATGGACGCGATCCTCCCGACCCCTACGTGTCACTGTTGCTACTGCCAGACAAGAACCGGG
GCACCAAGAGGAAGACCTCACAGAAGAAGAGGACCCTAAATCCTGAATTCAACGAACGGT
TTGAGTGGGAACTGCCCCTGGATGAGGCCCTCCGGCGAAAGCTGGATGTCTCTGTGAAGT
CCAGTTCCTCCTTCATGTCAAGAGAGCGTGAGCTGCTGGGGAAGGTGCAGTTGGACCTCG
CCAAGATAGACCTTTCCCAGGGAGCGGCCCAGTGGTATGACCTCATGGATGACAAGGACA
AGGGCAGCTCCTAAGAGCCAGGGATTACCAGCCTGACTGCTGTCTCTTTGCCTTGCCTCT
TGCTGCATCACCACCTTGTGATGAGCCTAAAGCCTGGGGCCTGAGAGCAGAGCCTGCACC
CCTCAGCCCTCTCACCTCCCAGGCCCATGCTGAGGCCTTTGCCTGACCAAAGAGGAGGAC
CGTATGTTACCCTTTACTGCACGGCCTTTATCCTTCTGGGCTCCTGGGGCAGGGATGTGG
GCTGGCTATTTCCTGCTCTGCCTGCACATTCTTCTTCCTGCCCAGCTCCTCAGGCCTTCT
ACGTCTGTGCCTGGCCACTGGCAGCACTAGCAGTGGCATTAGCTTATGCCAAATACAGCT
TTTGGAAAGACTTTTTTCTTTAATTGGATGGCCACCATCTTCCCTACTGTGAGCAGTCAG
GGAGGGTAAGCACATCAGTGGCAGAGTGGAAAGGCTAACCACTCAAGCTGAGGGACAACT
GCACTTGGCAAATGTACAGCAACCCAGACCCTGTGTCTAGCTCTCCACCCACTTTCCTCA
AGCCTGTCCTGAAAATTACACCTGCTGTGGTGACTGGGGGCAGGCCAGTCTCTTGATTTA
CTCTGGGAACACTTGGATTCCATCCAAGCCTTCAGGTAGCCCTTATCAGTCTTGGATTGG
AGCCTTTAGCTGGTGCTCTGCAGAGGGCTCTAGAGGACTTGAGACAGCGCCAATTTTTTG
TCCAGGTGCCTAGGCTGTTAACACAGTGATGAGAACTGAATCTCTTAGCTTTGTACCAAC
TCTGCCAATCCACTATATCTTACATTAAACATTATTCTCAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGACAGTCCCCAAGAGGCTCCAGCCGGGCCTCTGGGCCAAGTGAAACTGACTGTTTGGT
ACTACAGTGAAGAACGAAAGCTGGTCAGCATGGTCCACAGCTGCCGGGCCCTTCGACAGA
ATGGACGCGATCCTCCCGACCCCTACGTGTCACTGTTGCTACTGCCAGACAAGAACCGGG
GCACCAAGAGGAAGACCTCACAGAAGAAGAGGACCCTAAATCCTGAATTCAACGAACGGT
TTGAGTGGGAACTGCCCCTGGATGAGGCCCTCCGGCGAAAGCTGGATGTCTCTGTGAAGT
CCAGTTCCTCCTTCATGTCAAGAGAGCGTGAGCTGCTGGGGAAGGTGCAGTTGGACCTCG
CCAAGATAGACCTTTCCCAGGGAGCGGCCCAGTGGTATGACCTCATGGATGACAAGGACA
AGGGCAGCTCCTAAGAGCCAGGGATTACCAGCCTGACTGCTGTCTCTTTGCCTTGCCTCT
TGCTGCATCACCACCTTGTGATGAGCCTAAAGCCTGGGGCCTGAGAGCAGAGCCTGCACC
CCTCAGCCCTCTCACCTCCCAGGCCCATGCTGAGGCCTTTGCCTGACCAAAGAGGAGGAC
CGTATGTTACCCTTTACTGCACGGCCTTTATCCTTCTGGGCTCCTGGGGCAGGGATGTGG
GCTGGCTATTTCCTGCTCTGCCTGCACATTCTTCTTCCTGCCCAGCTCCTCAGGCCTTCT
ACGTCTGTGCCTGGCCACTGGCAGCACTAGCAGTGGCATTAGCTTATGCCAAATACAGCT
TTTGGAAAGACTTTTTTCTTTAATTGGATGGCCACCATCTTCCCTACTGTGAGCAGTCAG
GGAGGGTAAGCACATCAGTGGCAGAGTGGAAAGGCTAACCACTCAAGCTGAGGGACAACT
GCACTTGGCAAATGTACAGCAACCCAGACCCTGTGTCTAGCTCTCCACCCACTTTCCTCA
AGCCTGTCCTGAAAATTACACCTGCTGTGGTGACTGGGGGCAGGCCAGTCTCTTGATTTA
CTCTGGGAACACTTGGATTCCATCCAAGCCTTCAGGTAGCCCTTATCAGTCTTGGATTGG
AGCCTTTAGCTGGTGCTCTGCAGAGGGCTCTAGAGGACTTGAGACAGCGCCAATTTTTTG
TCCAGGTGCCTAGGCTGTTAACACAGTGATGAGAACTGAATCTCTTAGCTTTGTACCAAC
TCTGCCAATCCACTATATCTTACATTAAACATTATTCTCAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9CVH0_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9CVH0_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               427-581, - strand, RNAz p=0.999083

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               427-581, - strand, RNAz p=0.999083

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               106-240, gnl|bosTau2|chr5 (33477023-33476889)
               

               
               106-240, gnl|Hg17|chr12 (54823067-54823201)
               

               
               106-240, gnl|Mm7|chr10 (128013555-128013421)
               


               
               388-1242, gnl|bosTau2|chr5 (33476134-33475297)
               

               
               388-1242, gnl|Hg17|chr12 (54823867-54824722)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               106-240, gnl|bosTau2|chr5 (33477023-33476889)
               

               
               106-240, gnl|Hg17|chr12 (54823067-54823201)
               

               
               106-240, gnl|Mm7|chr10 (128013555-128013421)
               


               
               388-1242, gnl|bosTau2|chr5 (33476134-33475297)
               

               
               388-1242, gnl|Hg17|chr12 (54823867-54824722)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               cga (0.279096)
               

               
               clu (0.239292)
               

               
               hea (0.204499)
               

               
               fty (0.17584)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               ute (0.132784)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               clu (0.239292)
               

               
               hea (0.204499)
               

               
               fty (0.17584)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               ute (0.132784)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	106-240, gnl\|bosTau2\|chr5 (33477023-33476889)
	106-240, gnl\|Hg17\|chr12 (54823067-54823201)
	106-240, gnl\|Mm7\|chr10 (128013555-128013421)

	388-1242, gnl\|bosTau2\|chr5 (33476134-33475297)
	388-1242, gnl\|Hg17\|chr12 (54823867-54824722)

	cga (0.279096)
	clu (0.239292)
	hea (0.204499)
	fty (0.17584)
	nje (0.16592)
	csp (0.161186)
	cag (0.151194)
	ute (0.132784)
	cly (0.120642)
	eru (0.120048)
	ecc (0.115035)
	jca (0.11396)
	cty (0.10408)
	jej (0.0989218)
	ldo (0.0970026)