Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-db-g-01-0-UNL.s1.3

Sequence:


               
               GGAGGAGGAGGAGAAGGAGGAGGCGCAGGCGGAGGAGGGAAAAAAAGAGACCATAGACTT
CCACCTGGGTCTAGAGCGGCTCTTAAAGTAGTAGGGAGAGGAGGGAGGGCTGGGACCACC
TTCAGTACAGGCCGCCGGCGGTATCATGGCGACCCGGAACCCCCCTCCCCAAGACTATGA
AAGTGATGATGACTCTTACGAAGTGTTGGATTTAACTGAGTATGCCAGAAGACACCACTG
GTGGAATCGAGTGTTTGGCCACAGTTCCGGACCTATGGTAGAAAAATACTCAGTGGCCAC
CCAGATTGTAATGGGTGGAGTGAGTGGCTGGTGTGCAGGATTTTTGTTCCAGAAAGTTGG
AAAACTTGCAGCAACTGCAGTAGGTGGTGGCTTTCTTCTTCTTCAGATCGCCAGTCACAG
TGGCTATGTGCAGATCGACTGGAAGAGAGTTGAAAAAGATGTAAACAAAGCAAAAAGACA
GATTAAGAAACGAGCAAATAAGGCAGCACCTGAAATCAACAACATAATTGAAGAAGCAAC
AGAATTTGTCAAACAGAACATTGTCATATCCAGTGGATTTGTGGGAGGCTTTTTGCTAGG
CCTTGCATCTTAAGGATATGAATGATCTATCCCAGTGGAGTCACCTATGAGAAGAGAAGT
GGTGACAAGATGCTGTCAACATTGCATACTAGCAGATTCTCCAGGATGACAAGAAACAAT
TAGCTGGACGATACCAAACTCACTGCTTAGCATTTTGCCATCTGAAATTTGGCAGACTAC
TATCTGCTATAAAACAACCTATATGGTATATGTATAATAGTATTCCTAAGCAAAACATGG
CTTTTATTATTTTTTAAAAATTTGCATTTGTTTAAAATTTGCCTATAAAACACCATCATT
GGAAGTAGAAAGGGAGAGAGAAGCAAAATCTGTTGGATCTATTCCCCAGTGAAATATTTT
CCTCATTTTATTTTAATAAGATGTTCTCCATTGTGCTTTTTAGTATAGTGCCAATAATTA
AAAATTTGTACTATAGCTTCAACATTAGGGCTGACTTTTTTTGTCTAAAGCTATGTTTGC
AATAAACTGAAGAACTGTGATGCCCTTTTGTGGAAGGCTTTACAAATAATAGAGTTATTA
AAGATAATAAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGGAGGAGGAGAAGGAGGAGGCGCAGGCGGAGGAGGGAAAAAAAGAGACCATAGACTT
CCACCTGGGTCTAGAGCGGCTCTTAAAGTAGTAGGGAGAGGAGGGAGGGCTGGGACCACC
TTCAGTACAGGCCGCCGGCGGTATCATGGCGACCCGGAACCCCCCTCCCCAAGACTATGA
AAGTGATGATGACTCTTACGAAGTGTTGGATTTAACTGAGTATGCCAGAAGACACCACTG
GTGGAATCGAGTGTTTGGCCACAGTTCCGGACCTATGGTAGAAAAATACTCAGTGGCCAC
CCAGATTGTAATGGGTGGAGTGAGTGGCTGGTGTGCAGGATTTTTGTTCCAGAAAGTTGG
AAAACTTGCAGCAACTGCAGTAGGTGGTGGCTTTCTTCTTCTTCAGATCGCCAGTCACAG
TGGCTATGTGCAGATCGACTGGAAGAGAGTTGAAAAAGATGTAAACAAAGCAAAAAGACA
GATTAAGAAACGAGCAAATAAGGCAGCACCTGAAATCAACAACATAATTGAAGAAGCAAC
AGAATTTGTCAAACAGAACATTGTCATATCCAGTGGATTTGTGGGAGGCTTTTTGCTAGG
CCTTGCATCTTAAGGATATGAATGATCTATCCCAGTGGAGTCACCTATGAGAAGAGAAGT
GGTGACAAGATGCTGTCAACATTGCATACTAGCAGATTCTCCAGGATGACAAGAAACAAT
TAGCTGGACGATACCAAACTCACTGCTTAGCATTTTGCCATCTGAAATTTGGCAGACTAC
TATCTGCTATAAAACAACCTATATGGTATATGTATAATAGTATTCCTAAGCAAAACATGG
CTTTTATTATTTTTTAAAAATTTGCATTTGTTTAAAATTTGCCTATAAAACACCATCATT
GGAAGTAGAAAGGGAGAGAGAAGCAAAATCTGTTGGATCTATTCCCCAGTGAAATATTTT
CCTCATTTTATTTTAATAAGATGTTCTCCATTGTGCTTTTTAGTATAGTGCCAATAATTA
AAAATTTGTACTATAGCTTCAACATTAGGGCTGACTTTTTTTGTCTAAAGCTATGTTTGC
AATAAACTGAAGAACTGTGATGCCCTTTTGTGGAAGGCTTTACAAATAATAGAGTTATTA
AAGATAATAAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q8IVP5_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8IVP5_HUMAN

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               80-197, - strand, RNAz p=0.951495
               

               
               238-397, - strand, RNAz p=0.923941
               

               
               987-1133, + strand, RNAz p=0.70511

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-197, - strand, RNAz p=0.951495
               

               
               238-397, - strand, RNAz p=0.923941
               

               
               987-1133, + strand, RNAz p=0.70511

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               62-1133, gnl|bosTau2|chr15 (180517-179450)
               

               
               62-1133, gnl|Hg17|chr11 (122512408-122511477)
               

               
               62-1133, gnl|Mm7|chr9 (95268274-95267355)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               62-1133, gnl|bosTau2|chr15 (180517-179450)
               

               
               62-1133, gnl|Hg17|chr11 (122512408-122511477)
               

               
               62-1133, gnl|Mm7|chr9 (95268274-95267355)

Expressed library(ies): 40 entry(ies)

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Expressed library(ies): 40 entry(ies)

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               mgp (0.692042)
               

               
               nje (0.66368)
               

               
               liv (0.585137)
               

               
               lin (0.582411)
               

               
               spl (0.572738)
               

               
               thg (0.507164)
               

               
               spc (0.453463)
               

               
               ski (0.440205)
               

               
               ova (0.387397)
               

               
               ret (0.3862)
               

               
               cmu (0.372787)
               

               
               sin (0.349895)
               

               
               duo (0.345602)
               

               
               vin (0.332557)
               

               
               cty (0.31224)
               

               
               eje (0.296501)
               

               
               lnt (0.284616)
               

               
               lyg (0.266205)
               

               
               kid (0.259471)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               bfe (0.149858)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

Expressed library(ies): 40 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.692042)
               

               
               nje (0.66368)
               

               
               liv (0.585137)
               

               
               lin (0.582411)
               

               
               spl (0.572738)
               

               
               thg (0.507164)
               

               
               spc (0.453463)
               

               
               ski (0.440205)
               

               
               ova (0.387397)
               

               
               ret (0.3862)
               

               
               cmu (0.372787)
               

               
               sin (0.349895)
               

               
               duo (0.345602)
               

               
               vin (0.332557)
               

               
               cty (0.31224)
               

               
               eje (0.296501)
               

               
               lnt (0.284616)
               

               
               lyg (0.266205)
               

               
               kid (0.259471)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               bfe (0.149858)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

	80-197, - strand, RNAz p=0.951495
	238-397, - strand, RNAz p=0.923941
	987-1133, + strand, RNAz p=0.70511

	62-1133, gnl\|bosTau2\|chr15 (180517-179450)
	62-1133, gnl\|Hg17\|chr11 (122512408-122511477)
	62-1133, gnl\|Mm7\|chr9 (95268274-95267355)

	mgp (0.692042)
	nje (0.66368)
	liv (0.585137)
	lin (0.582411)
	spl (0.572738)
	thg (0.507164)
	spc (0.453463)
	ski (0.440205)
	ova (0.387397)
	ret (0.3862)
	cmu (0.372787)
	sin (0.349895)
	duo (0.345602)
	vin (0.332557)
	cty (0.31224)
	eje (0.296501)
	lnt (0.284616)
	lyg (0.266205)
	kid (0.259471)
	ece (0.229305)
	hea (0.204499)
	fcc (0.197785)
	sto (0.179824)
	rec (0.17307)
	eye (0.170503)
	cje (0.165235)
	nco (0.161734)
	mga (0.160205)
	fco (0.157208)
	tbr (0.154178)
	cag (0.151194)
	bfe (0.149858)
	csk (0.140746)
	hlv (0.139256)
	che (0.136314)
	bla (0.124347)
	tra (0.123092)
	pgl (0.118483)
	ecc (0.115035)
	ldo (0.0970026)