Ss1.1-uFN-UNL-P-FN-dd-b-10-0-UNL.s1.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TAGAGTTGGTGCCGGGACCTCTTGCGACCCTCGTCTCGTGTTATGATGCTGCCCTTCCCT TTTCTTTGGGCGACTAGGCCTCTGTGGAGATGTGGTCAGCTGGTCAAGATGGCCATAAGG AGCCAGCACAGCGAGGCGGCCCAGACCCAGACTGGAGAAGCAACCAAGGGCTGGTCAGGC CAGGAGAGTCTATCAGACAGTGACCCTGAGATGTGGGAGCTGCTGCGGAGAGAGAAGGAC AGGCAGTGTCGTGGCCTGGAGCTCATTGCCTCAGAGAACTTCTGCAGCCGAGCTGCGCTG GAGGCCCTGGGGTCCTGTCTGAACAACAAGTACTCGGAGGGTTATCCTGGCAAGAGATAC TATGGAGGAGCCGAGGTAGTGGATGAAATCGAGCTGCTGTGCCAGCGCCGGGCCTTGGAG GCCTTTGACCTGGATCCTGCTCAGTGGGGAGTCAATGTGCAGCCCTACTCGGGGTCCCCA GCCAATCTGGCTGCCTACACAGCCCTTCTGCAGCCTCACGACCGAATCATGGGGCTGGAC CTGCCCGATGGGGGCCATCTCACCCATGGCTACATGACCGATGTCAAGCGGATCTCAGCC ACATCCATCTTCTTTGAGTCTATGCCCTATAAGCTGAATCCCAAAACTGGCCTCATTGAC TATGACCAGCTGGCACTCACTGCTCGGCTCTTCCGGCCGCGACTCATCATAGCTGGAACG AGTGCCTATGCACGCCTCATCGACTATGCCCGCATGAGAGAGGTGTGTGATGAGGTCAAG GCACACCTGCTGGCAGACATGGCCCACATTAGTGGCCTCGTGGCTGCCAAGGTGATCCCC TCACCTTTTGAGCATGCGGATGTTGTCACCACCACCACTCACAAGACCCTTCGAGGGGCC AGGTCAGGACTCATCTTCTACCGGAAGGGTGTGCGGACTGTGGACCCCAAGACTGGCCGG GAGATCCCTTACACGTTTGAGGACCGAATCAACTTTGCTGTGTTCCCATCCCTGCAGGGG GGCCCCCACAACCATGCCATCGCTGCAGTGGCTGTGGCCTTAAAGCAGGCCTGCACCCCC ATGTTCCGGGAGTACTCCCTGCAGGTTCTGAAGAACGCTCGGGCCATGGCTGATGCCCTG CTAGAGCGAGGCTACTCGCTGGTGTCTGGCGGCACTGACAACCACTTAGTGCTGGTAGAC CTGCGGCCCAAGGGCCTGGATGGAGCTCGAGTTGAGCGGGTGCTAGAACTTGTGTCCATC ACGGCCAACAAGAACACCTGTCCTGGAGATCGAAGTGCCATCACTCCTGGGGGCCTGCGG CTGGGGACCCCAGCCTTGACGTCACGCCAGTTCCGTGAGGATGACTTCCGAAAAGTTGTG GCCTTTATAGACGAAGGCGTCAGCATCGGCTTGGAGGTGAAGAGCAAGACCACTAAACTC CAGGATTTCAAATCCTTCCTGCTCAAAGACCCAGAAACGTGCCGTCGGCTGGCTGACCTC AGGCAACGGGTGGAGCAGTTTGCCAGGGCCTTCCCCATGCCTGGCTTTGAGGAACACTGA AGGCACCTGAGAAATGAGCCCCACAGAGTGACATTCATTCCTCCTCCCCCTACCTGGATA AGGGTGGGGGTTTTACTGCTTATCTTCCAATTTTTTGCTGGAGGAGGGGAAGGCCTCCCA CCTCGGGAAAGGGCCAAGTGTAGTTCTCTGTCCCAGAATCTGTAGCTGAGAAGCTTTCTT CTTGTAACAAGACTTAGAAGGAAAAGGCTGGGAAGCTTTCTGCCCTAACCTCTCCCACTA TTTCAGTGTTACAGACTCCCTGCCCTTTCTTGGGGAGGGGGGAGTCCCCCTTCGTGAGCC AGAGGAAGGGGTGGGTATACCACCTCCTTTCTGTTTTTATCTAATAAAATGTTAACCTAC AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TAGAGTTGGTGCCGGGACCTCTTGCGACCCTCGTCTCGTGTTATGATGCTGCCCTTCCCT TTTCTTTGGGCGACTAGGCCTCTGTGGAGATGTGGTCAGCTGGTCAAGATGGCCATAAGG AGCCAGCACAGCGAGGCGGCCCAGACCCAGACTGGAGAAGCAACCAAGGGCTGGTCAGGC CAGGAGAGTCTATCAGACAGTGACCCTGAGATGTGGGAGCTGCTGCGGAGAGAGAAGGAC AGGCAGTGTCGTGGCCTGGAGCTCATTGCCTCAGAGAACTTCTGCAGCCGAGCTGCGCTG GAGGCCCTGGGGTCCTGTCTGAACAACAAGTACTCGGAGGGTTATCCTGGCAAGAGATAC TATGGAGGAGCCGAGGTAGTGGATGAAATCGAGCTGCTGTGCCAGCGCCGGGCCTTGGAG GCCTTTGACCTGGATCCTGCTCAGTGGGGAGTCAATGTGCAGCCCTACTCGGGGTCCCCA GCCAATCTGGCTGCCTACACAGCCCTTCTGCAGCCTCACGACCGAATCATGGGGCTGGAC CTGCCCGATGGGGGCCATCTCACCCATGGCTACATGACCGATGTCAAGCGGATCTCAGCC ACATCCATCTTCTTTGAGTCTATGCCCTATAAGCTGAATCCCAAAACTGGCCTCATTGAC TATGACCAGCTGGCACTCACTGCTCGGCTCTTCCGGCCGCGACTCATCATAGCTGGAACG AGTGCCTATGCACGCCTCATCGACTATGCCCGCATGAGAGAGGTGTGTGATGAGGTCAAG GCACACCTGCTGGCAGACATGGCCCACATTAGTGGCCTCGTGGCTGCCAAGGTGATCCCC TCACCTTTTGAGCATGCGGATGTTGTCACCACCACCACTCACAAGACCCTTCGAGGGGCC AGGTCAGGACTCATCTTCTACCGGAAGGGTGTGCGGACTGTGGACCCCAAGACTGGCCGG GAGATCCCTTACACGTTTGAGGACCGAATCAACTTTGCTGTGTTCCCATCCCTGCAGGGG GGCCCCCACAACCATGCCATCGCTGCAGTGGCTGTGGCCTTAAAGCAGGCCTGCACCCCC ATGTTCCGGGAGTACTCCCTGCAGGTTCTGAAGAACGCTCGGGCCATGGCTGATGCCCTG CTAGAGCGAGGCTACTCGCTGGTGTCTGGCGGCACTGACAACCACTTAGTGCTGGTAGAC CTGCGGCCCAAGGGCCTGGATGGAGCTCGAGTTGAGCGGGTGCTAGAACTTGTGTCCATC ACGGCCAACAAGAACACCTGTCCTGGAGATCGAAGTGCCATCACTCCTGGGGGCCTGCGG CTGGGGACCCCAGCCTTGACGTCACGCCAGTTCCGTGAGGATGACTTCCGAAAAGTTGTG GCCTTTATAGACGAAGGCGTCAGCATCGGCTTGGAGGTGAAGAGCAAGACCACTAAACTC CAGGATTTCAAATCCTTCCTGCTCAAAGACCCAGAAACGTGCCGTCGGCTGGCTGACCTC AGGCAACGGGTGGAGCAGTTTGCCAGGGCCTTCCCCATGCCTGGCTTTGAGGAACACTGA AGGCACCTGAGAAATGAGCCCCACAGAGTGACATTCATTCCTCCTCCCCCTACCTGGATA AGGGTGGGGGTTTTACTGCTTATCTTCCAATTTTTTGCTGGAGGAGGGGAAGGCCTCCCA CCTCGGGAAAGGGCCAAGTGTAGTTCTCTGTCCCAGAATCTGTAGCTGAGAAGCTTTCTT CTTGTAACAAGACTTAGAAGGAAAAGGCTGGGAAGCTTTCTGCCCTAACCTCTCCCACTA TTTCAGTGTTACAGACTCCCTGCCCTTTCTTGGGGAGGGGGGAGTCCCCCTTCGTGAGCC AGAGGAAGGGGTGGGTATACCACCTCCTTTCTGTTTTTATCTAATAAAATGTTAACCTAC AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1579-1719, + strand, RNAz p=0.928277 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1579-1719, + strand, RNAz p=0.928277 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC011911, + |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 232-359, gnl|bosTau2|chr19 (26670619-26670492) | |
| 232-359, gnl|canFam2|chr5 (44230772-44230691) | |
| 232-359, gnl|canFam2|chr5 (44230795-44230691) | |
| 232-359, gnl|danRer3|chr16 (15490718-15490822) | |
| 232-359, gnl|dasNov1|scaffold_82208 (7335-7254) | |
| 232-359, gnl|dasNov1|scaffold_82208 (7358-7254) | |
| 232-359, gnl|echTel1|scaffold_287489 (65431-65512) | |
| 232-359, gnl|echTel1|scaffold_287489 (65430-65512) | |
| 232-359, gnl|fr1|chrUn (273861821-273861867) | |
| 232-359, gnl|fr1|chrUn (273861967-273862059) | |
| 232-359, gnl|galGal2|chr14 (7160894-7160972) | |
| 232-359, gnl|galGal2|chr14 (7160886-7160972) | |
| 232-359, gnl|hg17|chr1 (43986260-43986341) | |
| 232-359, gnl|hg17|chr17 (18197687-18197791) | |
| 232-359, gnl|Hg17|chr17 (18197835-18197708) | |
| 232-359, gnl|loxAfr1|scaffold_59712 (11039-11120) | |
| 232-359, gnl|loxAfr1|scaffold_59712 (11018-11120) | |
| 232-359, gnl|mm7|chr11 (60885820-60885901) | |
| 232-359, gnl|mm7|chr11 (60885797-60885901) | |
| 232-359, gnl|Mm7|chr11 (60885945-60885818) | |
| 232-359, gnl|monDom2|scaffold_55 (12024542-12024461) | |
| 232-359, gnl|monDom2|scaffold_55 (12024551-12024461) | |
| 232-359, gnl|panTro1|chr1 (44975717-44975798) | |
| 232-359, gnl|panTro1|chr19 (18603617-18603721) | |
| 232-359, gnl|rheMac2|chr1 (46773405-46773486) | |
| 232-359, gnl|rheMac2|chr16 (18276701-18276805) | |
| 232-359, gnl|rn3|chr10 (46964132-46964213) | |
| 232-359, gnl|rn3|chr10 (46964109-46964213) | |
| 232-359, gnl|tetNig1|chrUn_random (38810714-38810641) | |
| 232-359, gnl|tetNig1|chrUn_random (38810745-38810641) | |
| 232-359, gnl|xenTro1|scaffold_142 (1050949-1050868) | |
| 232-359, gnl|xenTro1|scaffold_142 (1050949-1050868) | |
| 472-633, gnl|bosTau2|chr19 (26668562-26668401) | |
| 472-633, gnl|Hg17|chr17 (18191696-18191535) | |
| 472-633, gnl|Mm7|chr11 (60883147-60882986) | |
| 708-934, gnl|bosTau2|chr19 (26667541-26667315) | |
| 708-934, gnl|Hg17|chr17 (18184302-18184076) | |
| 708-934, gnl|Mm7|chr11 (60879303-60879077) | |
| 1165-1337, gnl|bosTau2|chr5 (32455839-32455666) | |
| 1165-1337, gnl|Hg17|chr12 (55913795-55913968) | |
| 1165-1337, gnl|Mm7|chr10 (127019773-127019599) | |
| 1435-1719, gnl|bosTau2|chr5 (32455365-32455078) | |
| 1435-1719, gnl|Hg17|chr12 (55914286-55914561) | |
| 1435-1719, gnl|Mm7|chr10 (127019303-127019001) | |
| 1738-1918, gnl|bosTau2|chr5 (32455088-32454911) | |
| 1738-1918, gnl|Hg17|chr12 (55914551-55914774) | |
| 1738-1918, gnl|Mm7|chr10 (127019018-127018708) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 232-359, gnl|bosTau2|chr19 (26670619-26670492) | |
| 232-359, gnl|canFam2|chr5 (44230772-44230691) | |
| 232-359, gnl|canFam2|chr5 (44230795-44230691) | |
| 232-359, gnl|danRer3|chr16 (15490718-15490822) | |
| 232-359, gnl|dasNov1|scaffold_82208 (7335-7254) | |
| 232-359, gnl|dasNov1|scaffold_82208 (7358-7254) | |
| 232-359, gnl|echTel1|scaffold_287489 (65431-65512) | |
| 232-359, gnl|echTel1|scaffold_287489 (65430-65512) | |
| 232-359, gnl|fr1|chrUn (273861821-273861867) | |
| 232-359, gnl|fr1|chrUn (273861967-273862059) | |
| 232-359, gnl|galGal2|chr14 (7160894-7160972) | |
| 232-359, gnl|galGal2|chr14 (7160886-7160972) | |
| 232-359, gnl|hg17|chr1 (43986260-43986341) | |
| 232-359, gnl|hg17|chr17 (18197687-18197791) | |
| 232-359, gnl|Hg17|chr17 (18197835-18197708) | |
| 232-359, gnl|loxAfr1|scaffold_59712 (11039-11120) | |
| 232-359, gnl|loxAfr1|scaffold_59712 (11018-11120) | |
| 232-359, gnl|mm7|chr11 (60885820-60885901) | |
| 232-359, gnl|mm7|chr11 (60885797-60885901) | |
| 232-359, gnl|Mm7|chr11 (60885945-60885818) | |
| 232-359, gnl|monDom2|scaffold_55 (12024542-12024461) | |
| 232-359, gnl|monDom2|scaffold_55 (12024551-12024461) | |
| 232-359, gnl|panTro1|chr1 (44975717-44975798) | |
| 232-359, gnl|panTro1|chr19 (18603617-18603721) | |
| 232-359, gnl|rheMac2|chr1 (46773405-46773486) | |
| 232-359, gnl|rheMac2|chr16 (18276701-18276805) | |
| 232-359, gnl|rn3|chr10 (46964132-46964213) | |
| 232-359, gnl|rn3|chr10 (46964109-46964213) | |
| 232-359, gnl|tetNig1|chrUn_random (38810714-38810641) | |
| 232-359, gnl|tetNig1|chrUn_random (38810745-38810641) | |
| 232-359, gnl|xenTro1|scaffold_142 (1050949-1050868) | |
| 232-359, gnl|xenTro1|scaffold_142 (1050949-1050868) | |
| 472-633, gnl|bosTau2|chr19 (26668562-26668401) | |
| 472-633, gnl|Hg17|chr17 (18191696-18191535) | |
| 472-633, gnl|Mm7|chr11 (60883147-60882986) | |
| 708-934, gnl|bosTau2|chr19 (26667541-26667315) | |
| 708-934, gnl|Hg17|chr17 (18184302-18184076) | |
| 708-934, gnl|Mm7|chr11 (60879303-60879077) | |
| 1165-1337, gnl|bosTau2|chr5 (32455839-32455666) | |
| 1165-1337, gnl|Hg17|chr12 (55913795-55913968) | |
| 1165-1337, gnl|Mm7|chr10 (127019773-127019599) | |
| 1435-1719, gnl|bosTau2|chr5 (32455365-32455078) | |
| 1435-1719, gnl|Hg17|chr12 (55914286-55914561) | |
| 1435-1719, gnl|Mm7|chr10 (127019303-127019001) | |
| 1738-1918, gnl|bosTau2|chr5 (32455088-32454911) | |
| 1738-1918, gnl|Hg17|chr12 (55914551-55914774) | |
| 1738-1918, gnl|Mm7|chr10 (127019018-127018708) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| ill (0.351185) | |
| jca (0.34188) | |
| jej (0.296765) | |
| clu (0.239292) | |
| fli (0.202881) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| cki (0.165235) | |
| cli (0.152812) | |
| cag (0.151194) | |
| nca (0.136874) | |
| pla (0.133672) | |
| ebs (0.118301) | |
| cty (0.10408) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.351185) | |
| jca (0.34188) | |
| jej (0.296765) | |
| clu (0.239292) | |
| fli (0.202881) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| cki (0.165235) | |
| cli (0.152812) | |
| cag (0.151194) | |
| nca (0.136874) | |
| pla (0.133672) | |
| ebs (0.118301) | |
| cty (0.10408) |