Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-df-a-12-0-UNL.s1.3

Sequence:


               
               GCCAGCCATGGTGAACCTGGGCCTGTCGCGGGTGGACGACGCCGTGGCCGACAAGCACCC
GGGACTAGGGGAGTATGCCGCGTGCCAGTCCAACGCCTTCATGAAGGGCATTTTCACCTT
TGTCACAGGCACTGGTGCGACCTTTGGCCTGCAGATGCTCGTTCAGAAGAAGTTTCCATA
CCCCTTTCAGTGGAACCTGCTGGTGGCCGTGGTCGCAGGCTCAGTGGCCAGCTACTGGGT
GACCCGCGTGGAGTCGCAGAAATGCAGCAACCTCTGGCTCTTTCTGGAGACCGGGAAGCT
CCCCAAAGATGTGGGCACAGATCGGCATGACCAGGAGAGCTCCAGCCGGGGGCACAGAAG
ACATGGGGCTGGAGAGTTCTAGAACATAGCCCTCAGCACCTGTGCACCCCAGGCTGGCCC
TCCCCACACCCAAAGGTACCCCAGCCCTGTCCCCTGCACACATGCTCCTGCCCAGCCTGG
CTGCCCAGGAGGTCAGACCAAGAGGTGCTGCGCCTGGGCGGCTGGCCTGCTGGGCAACAA
AAACACGTGGACACAGAGCTGGCGCAGGTGGATCAGGCTGTCTCACGCTCTTTGGCAGCA
GCAGCTCTGGGGCTCACGGTGGGGCTTCCCTGCGCCTGACGCTCCCTTTCCGGCCCCTGC
GCCCCCCTACCAATCACAGGCGACGGTGGCTGCTGGCGTTGTGGACTAATAAACACCTTG
CCCTTTCTCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCAGCCATGGTGAACCTGGGCCTGTCGCGGGTGGACGACGCCGTGGCCGACAAGCACCC
GGGACTAGGGGAGTATGCCGCGTGCCAGTCCAACGCCTTCATGAAGGGCATTTTCACCTT
TGTCACAGGCACTGGTGCGACCTTTGGCCTGCAGATGCTCGTTCAGAAGAAGTTTCCATA
CCCCTTTCAGTGGAACCTGCTGGTGGCCGTGGTCGCAGGCTCAGTGGCCAGCTACTGGGT
GACCCGCGTGGAGTCGCAGAAATGCAGCAACCTCTGGCTCTTTCTGGAGACCGGGAAGCT
CCCCAAAGATGTGGGCACAGATCGGCATGACCAGGAGAGCTCCAGCCGGGGGCACAGAAG
ACATGGGGCTGGAGAGTTCTAGAACATAGCCCTCAGCACCTGTGCACCCCAGGCTGGCCC
TCCCCACACCCAAAGGTACCCCAGCCCTGTCCCCTGCACACATGCTCCTGCCCAGCCTGG
CTGCCCAGGAGGTCAGACCAAGAGGTGCTGCGCCTGGGCGGCTGGCCTGCTGGGCAACAA
AAACACGTGGACACAGAGCTGGCGCAGGTGGATCAGGCTGTCTCACGCTCTTTGGCAGCA
GCAGCTCTGGGGCTCACGGTGGGGCTTCCCTGCGCCTGACGCTCCCTTTCCGGCCCCTGC
GCCCCCCTACCAATCACAGGCGACGGTGGCTGCTGGCGTTGTGGACTAATAAACACCTTG
CCCTTTCTCCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q96I45_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q96I45_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               319-447, - strand, RNAz p=0.999258

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               319-447, - strand, RNAz p=0.999258

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               319-732, gnl|bosTau2|chr11 (86181437-86181857)
               

               
               319-732, gnl|Hg17|chr9 (136963106-136963546)
               

               
               319-732, gnl|Mm7|chr2 (25627843-25627413)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               319-732, gnl|bosTau2|chr11 (86181437-86181857)
               

               
               319-732, gnl|Hg17|chr9 (136963106-136963546)
               

               
               319-732, gnl|Mm7|chr2 (25627843-25627413)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               nco (0.485201)
               

               
               pty (0.428143)
               

               
               cga (0.279096)
               

               
               mas (0.210305)
               

               
               nje (0.16592)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 10 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.485201)
               

               
               pty (0.428143)
               

               
               cga (0.279096)
               

               
               mas (0.210305)
               

               
               nje (0.16592)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	319-732, gnl\|bosTau2\|chr11 (86181437-86181857)
	319-732, gnl\|Hg17\|chr9 (136963106-136963546)
	319-732, gnl\|Mm7\|chr2 (25627843-25627413)

	nco (0.485201)
	pty (0.428143)
	cga (0.279096)
	mas (0.210305)
	nje (0.16592)
	cli (0.152812)
	eli (0.151814)
	jca (0.11396)
	jej (0.0989218)
	eje (0.0988338)