Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-dg-e-01-0-UNL.s1.3

Sequence:


               
               GCGGCCGCTCTCAGCTGGAGCCTGACATCATGCGACAAGAAGAGTAATCTCTCCCCCCAT
TTTGACAATGGAAGACTCAGGGAAGACTTTCAGCTCTGAGGAGGAAGAAGCTAACTATTG
GAAAGACCTGGCTATGACCTACAAGCAGAGGGCGGAGAATACACAGGAGGAACTGCGAGA
ATTCCAGGAGGGAAGCCGAGAATACGAAGCTGAATTGGAGACGCAGCTGCAGCAGATCGA
AACCAGGAACAGGGACCTGCTGTCGGAAAATAACCGTCTCCGCATGGAGCTGGAGACCAT
CAAGGAGAAGTTTGAAACGCAGCATTCTGAAGGCTACCGGCAGATCTCGGCCTTGGAGGA
TGACCTTGCCCAGACAAAAGCCATTAAAGATCAACTGCAGAAATACATCAGAGAGTTGGA
GCAAGCCAACGACGACTTGGAAAGGGCCAAACGGGCCACCATCATGTCTCTGGAGGACTT
TGAGCAGCGCTTGAATCAAGCCATTGAGAGAAATGCCTTCCTGGAGAGCGAACTGGATGA
GAAGGAGAATCTCCTAGAATCTGTTCAGCGACTGAAGGATGAAGCCAGAGATTTGCGGCA
GGAACTGGCTGTGCAGCAGAAGCAGGAGAAACCCAGGACCCCCATGCCCAGCTCGGTGGA
GGCTGAAAGGACAGACACAGCTGTGCAGGCCACTGGCTCCGTGCCGTCCACCCCATAGTT
CACCGAGGGNCCAGCTCCACTTGAATACACCGGGAG------------TGGATNATCCAG
GGGGGGACCCCTCANACGGCGGCCGGATATCAGCCTCATATCGTGGNGACTGTTCGGAAG
TGGGGCTCTGGATCAACTTCATCTGCGGACTTGTNTAGATAGTCCAANCGACAGTGCCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCTCTCAGCTGGAGCCTGACATCATGCGACAAGAAGAGTAATCTCTCCCCCCAT
TTTGACAATGGAAGACTCAGGGAAGACTTTCAGCTCTGAGGAGGAAGAAGCTAACTATTG
GAAAGACCTGGCTATGACCTACAAGCAGAGGGCGGAGAATACACAGGAGGAACTGCGAGA
ATTCCAGGAGGGAAGCCGAGAATACGAAGCTGAATTGGAGACGCAGCTGCAGCAGATCGA
AACCAGGAACAGGGACCTGCTGTCGGAAAATAACCGTCTCCGCATGGAGCTGGAGACCAT
CAAGGAGAAGTTTGAAACGCAGCATTCTGAAGGCTACCGGCAGATCTCGGCCTTGGAGGA
TGACCTTGCCCAGACAAAAGCCATTAAAGATCAACTGCAGAAATACATCAGAGAGTTGGA
GCAAGCCAACGACGACTTGGAAAGGGCCAAACGGGCCACCATCATGTCTCTGGAGGACTT
TGAGCAGCGCTTGAATCAAGCCATTGAGAGAAATGCCTTCCTGGAGAGCGAACTGGATGA
GAAGGAGAATCTCCTAGAATCTGTTCAGCGACTGAAGGATGAAGCCAGAGATTTGCGGCA
GGAACTGGCTGTGCAGCAGAAGCAGGAGAAACCCAGGACCCCCATGCCCAGCTCGGTGGA
GGCTGAAAGGACAGACACAGCTGTGCAGGCCACTGGCTCCGTGCCGTCCACCCCATAGTT
CACCGAGGGNCCAGCTCCACTTGAATACACCGGGAG------------TGGATNATCCAG
GGGGGGACCCCTCANACGGCGGCCGGATATCAGCCTCATATCGTGGNGACTGTTCGGAAG
TGGGGCTCTGGATCAACTTCATCTGCGGACTTGTNTAGATAGTCCAANCGACAGTGCCAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57110325|ref|XP_545332.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57110325|ref|XP_545332.1|

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               24-151, gnl|bosTau2|chr25 (16224040-16224168)
               

               
               24-151, gnl|Hg17|chr16 (15666093-15666220)
               

               
               24-151, gnl|Mm7|chr16 (13715959-13716084)
               


               
               177-419, gnl|bosTau2|chr11 (79706082-79706319)
               

               
               177-419, gnl|Hg17|chr13 (36277344-36277115)
               


               
               589-750, gnl|bosTau2|chr25 (16244969-16245130)
               

               
               589-750, gnl|Hg17|chr16 (15692500-15692661)
               

               
               589-750, gnl|Mm7|chr16 (13732200-13732361)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-151, gnl|bosTau2|chr25 (16224040-16224168)
               

               
               24-151, gnl|Hg17|chr16 (15666093-15666220)
               

               
               24-151, gnl|Mm7|chr16 (13715959-13716084)
               


               
               177-419, gnl|bosTau2|chr11 (79706082-79706319)
               

               
               177-419, gnl|Hg17|chr13 (36277344-36277115)
               


               
               589-750, gnl|bosTau2|chr25 (16244969-16245130)
               

               
               589-750, gnl|Hg17|chr16 (15692500-15692661)
               

               
               589-750, gnl|Mm7|chr16 (13732200-13732361)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.245128)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.245128)

	24-151, gnl\|bosTau2\|chr25 (16224040-16224168)
	24-151, gnl\|Hg17\|chr16 (15666093-15666220)
	24-151, gnl\|Mm7\|chr16 (13715959-13716084)

	177-419, gnl\|bosTau2\|chr11 (79706082-79706319)
	177-419, gnl\|Hg17\|chr13 (36277344-36277115)

	589-750, gnl\|bosTau2\|chr25 (16244969-16245130)
	589-750, gnl\|Hg17\|chr16 (15692500-15692661)
	589-750, gnl\|Mm7\|chr16 (13732200-13732361)