Ss1.1-unkn-05a04ct3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGCCGGGAGCCGGGAGCCGAGCGCGCCGGGCTGGGGCCGGGCCGGAGCGGAGCGGAGAA GGAGCGCGCCCGCCCCAGCCCCGAGTCCGCCGCCTGCCCGCCCGCCCGCCGTCGCCGCCG CCGGCCCAGCGGCCGCCGCCCCAGCCATGGAGCAAGACCACAGCCCCCGGAAGATCCAAT TCACCGTCCCGCTGCTGGAGCCGCACCTTGACCCCGAGGCGGCGGAGCAGATCCGGAGGC GCCGCCCCACCCCTGCCACCCTCGTGCTGACTAGTGACCAGTCATCTCCAGAGGTCGATG AAGACCGGATCCCCAACCCACTTCTCAAGCCCACTTTGTCCATGTCTCCACGGCAACAGA AGAAGGTGACGAGGACCACACCCACAATGAAAGAGCTCCAGATGATGGTTGAACATCACC TGGGGCAACAGCAGCCGGGAGAGGAGCCCGAAGGAGCCGCCGAGAGCACAGGGACCCAGG AGTCCTGCCCACCTGGGATCACAACCACAGGAGCAGAGTCACGGCCGGGAGCCACTGGGA AAGCAGACAAGCCTGCAGAATCCATCCCTCAGGAGAGGGGCAGTGAGAAACCGAGCACAG AGGAACCCTCCACCCAGTGACCACCGTGGGATTCCCAGGGAGCCAATTCGGTTTCAGAGT GAAGCAGGTGTCTTGGAATCAAGACTGCAGTTGGGAATGCATGGACACTGGATTTGTTTC TTATTTCTTCACTTTTGGGGAAAAATCTCTTGTTTTTAAAAAGCGATAAATTTGGTGTTA AGCCCGCGCAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGCCGGGAGCCGGGAGCCGAGCGCGCCGGGCTGGGGCCGGGCCGGAGCGGAGCGGAGAA GGAGCGCGCCCGCCCCAGCCCCGAGTCCGCCGCCTGCCCGCCCGCCCGCCGTCGCCGCCG CCGGCCCAGCGGCCGCCGCCCCAGCCATGGAGCAAGACCACAGCCCCCGGAAGATCCAAT TCACCGTCCCGCTGCTGGAGCCGCACCTTGACCCCGAGGCGGCGGAGCAGATCCGGAGGC GCCGCCCCACCCCTGCCACCCTCGTGCTGACTAGTGACCAGTCATCTCCAGAGGTCGATG AAGACCGGATCCCCAACCCACTTCTCAAGCCCACTTTGTCCATGTCTCCACGGCAACAGA AGAAGGTGACGAGGACCACACCCACAATGAAAGAGCTCCAGATGATGGTTGAACATCACC TGGGGCAACAGCAGCCGGGAGAGGAGCCCGAAGGAGCCGCCGAGAGCACAGGGACCCAGG AGTCCTGCCCACCTGGGATCACAACCACAGGAGCAGAGTCACGGCCGGGAGCCACTGGGA AAGCAGACAAGCCTGCAGAATCCATCCCTCAGGAGAGGGGCAGTGAGAAACCGAGCACAG AGGAACCCTCCACCCAGTGACCACCGTGGGATTCCCAGGGAGCCAATTCGGTTTCAGAGT GAAGCAGGTGTCTTGGAATCAAGACTGCAGTTGGGAATGCATGGACACTGGATTTGTTTC TTATTTCTTCACTTTTGGGGAAAAATCTCTTGTTTTTAAAAAGCGATAAATTTGGTGTTA AGCCCGCGCAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 392-549, gnl|bosTau2|chr5 (16227812-16227969) | |
| 392-549, gnl|echTel1|scaffold_293347 (157-5) | |
| 392-549, gnl|echTel1|scaffold_293347 (4-159) | |
| 392-549, gnl|hg17|chr11 (75300004-75300160) | |
| 392-549, gnl|Hg17|chr12 (53262184-53262027) | |
| 392-549, gnl|hg17|chr16 (35004135-35004287) | |
| 392-549, gnl|loxAfr1|scaffold_25032 (14210-14055) | |
| 392-549, gnl|loxAfr1|scaffold_25032 (14058-14211) | |
| 392-549, gnl|mm7|chr15 (103521300-103521145) | |
| 392-549, gnl|mm7|chr15 (103521146-103521302) | |
| 392-549, gnl|Mm7|chr15 (103521301-103521144) | |
| 392-549, gnl|oryCun1|scaffold_182492 (12560-12405) | |
| 392-549, gnl|oryCun1|scaffold_182492 (12406-12562) | |
| 392-549, gnl|panTro1|chr18 (37059321-37059473) | |
| 392-549, gnl|panTro1|chr9 (76587878-76588034) | |
| 392-549, gnl|rheMac2|chr14 (74086700-74086538) | |
| 392-549, gnl|rheMac2|chr14 (74086539-74086702) | |
| 392-549, gnl|rn3|chr7 (142511286-142511131) | |
| 392-549, gnl|rn3|chr7 (142511132-142511287) | |
| 550-646, gnl|bosTau2|chr5 (16228878-16228980) | |
| 550-646, gnl|canFam2|chr19 (55668098-55667999) | |
| 550-646, gnl|canFam2|chr19 (55668098-55667990) | |
| 550-646, gnl|dasNov1|scaffold_16780 (3586-3486) | |
| 550-646, gnl|dasNov1|scaffold_16780 (3586-3477) | |
| 550-646, gnl|hg17|chr11 (75299894-75300003) | |
| 550-646, gnl|hg17|chr12 (53260994-53261094) | |
| 550-646, gnl|Hg17|chr12 (53261101-53260999) | |
| 550-646, gnl|loxAfr1|scaffold_25032 (13058-13158) | |
| 550-646, gnl|loxAfr1|scaffold_25032 (13058-13167) | |
| 550-646, gnl|mm7|chr15 (103520171-103520271) | |
| 550-646, gnl|mm7|chr15 (103520171-103520280) | |
| 550-646, gnl|Mm7|chr15 (103520278-103520176) | |
| 550-646, gnl|oryCun1|scaffold_182492 (11473-11558) | |
| 550-646, gnl|oryCun1|scaffold_182492 (11475-11567) | |
| 550-646, gnl|panTro1|chr10 (54528207-54528307) | |
| 550-646, gnl|panTro1|chr9 (76587768-76587877) | |
| 550-646, gnl|rheMac2|chr11 (51698473-51698573) | |
| 550-646, gnl|rheMac2|chr14 (74086429-74086538) | |
| 550-646, gnl|rn3|chr7 (142510221-142510321) | |
| 550-646, gnl|rn3|chr7 (142510221-142510330) | |
| 650-785, gnl|bosTau2|chr5 (16229764-16229900) | |
| 650-785, gnl|canFam2|chr19 (55668236-55668099) | |
| 650-785, gnl|dasNov1|scaffold_16780 (4158-4243) | |
| 650-785, gnl|dasNov1|scaffold_16780 (4290-4159) | |
| 650-785, gnl|hg17|chr11 (75299752-75299893) | |
| 650-785, gnl|Hg17|chr12 (53260444-53260309) | |
| 650-785, gnl|hg17|chr16 (35004394-35004478) | |
| 650-785, gnl|loxAfr1|scaffold_25032 (12476-12389) | |
| 650-785, gnl|loxAfr1|scaffold_25032 (12342-12469) | |
| 650-785, gnl|mm7|chr15 (103519753-103519699) | |
| 650-785, gnl|mm7|chr15 (103519659-103519766) | |
| 650-785, gnl|Mm7|chr15 (103519768-103519657) | |
| 650-785, gnl|oryCun1|scaffold_182492 (10948-10863) | |
| 650-785, gnl|oryCun1|scaffold_182492 (10812-10947) | |
| 650-785, gnl|panTro1|chr18 (37059580-37059664) | |
| 650-785, gnl|panTro1|chr9 (76587626-76587767) | |
| 650-785, gnl|rheMac2|chr14 (74086429-74086346) | |
| 650-785, gnl|rheMac2|chr14 (74086288-74086428) | |
| 650-785, gnl|rn3|chr7 (142509718-142509823) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 392-549, gnl|bosTau2|chr5 (16227812-16227969) | |
| 392-549, gnl|echTel1|scaffold_293347 (157-5) | |
| 392-549, gnl|echTel1|scaffold_293347 (4-159) | |
| 392-549, gnl|hg17|chr11 (75300004-75300160) | |
| 392-549, gnl|Hg17|chr12 (53262184-53262027) | |
| 392-549, gnl|hg17|chr16 (35004135-35004287) | |
| 392-549, gnl|loxAfr1|scaffold_25032 (14210-14055) | |
| 392-549, gnl|loxAfr1|scaffold_25032 (14058-14211) | |
| 392-549, gnl|mm7|chr15 (103521300-103521145) | |
| 392-549, gnl|mm7|chr15 (103521146-103521302) | |
| 392-549, gnl|Mm7|chr15 (103521301-103521144) | |
| 392-549, gnl|oryCun1|scaffold_182492 (12560-12405) | |
| 392-549, gnl|oryCun1|scaffold_182492 (12406-12562) | |
| 392-549, gnl|panTro1|chr18 (37059321-37059473) | |
| 392-549, gnl|panTro1|chr9 (76587878-76588034) | |
| 392-549, gnl|rheMac2|chr14 (74086700-74086538) | |
| 392-549, gnl|rheMac2|chr14 (74086539-74086702) | |
| 392-549, gnl|rn3|chr7 (142511286-142511131) | |
| 392-549, gnl|rn3|chr7 (142511132-142511287) | |
| 550-646, gnl|bosTau2|chr5 (16228878-16228980) | |
| 550-646, gnl|canFam2|chr19 (55668098-55667999) | |
| 550-646, gnl|canFam2|chr19 (55668098-55667990) | |
| 550-646, gnl|dasNov1|scaffold_16780 (3586-3486) | |
| 550-646, gnl|dasNov1|scaffold_16780 (3586-3477) | |
| 550-646, gnl|hg17|chr11 (75299894-75300003) | |
| 550-646, gnl|hg17|chr12 (53260994-53261094) | |
| 550-646, gnl|Hg17|chr12 (53261101-53260999) | |
| 550-646, gnl|loxAfr1|scaffold_25032 (13058-13158) | |
| 550-646, gnl|loxAfr1|scaffold_25032 (13058-13167) | |
| 550-646, gnl|mm7|chr15 (103520171-103520271) | |
| 550-646, gnl|mm7|chr15 (103520171-103520280) | |
| 550-646, gnl|Mm7|chr15 (103520278-103520176) | |
| 550-646, gnl|oryCun1|scaffold_182492 (11473-11558) | |
| 550-646, gnl|oryCun1|scaffold_182492 (11475-11567) | |
| 550-646, gnl|panTro1|chr10 (54528207-54528307) | |
| 550-646, gnl|panTro1|chr9 (76587768-76587877) | |
| 550-646, gnl|rheMac2|chr11 (51698473-51698573) | |
| 550-646, gnl|rheMac2|chr14 (74086429-74086538) | |
| 550-646, gnl|rn3|chr7 (142510221-142510321) | |
| 550-646, gnl|rn3|chr7 (142510221-142510330) | |
| 650-785, gnl|bosTau2|chr5 (16229764-16229900) | |
| 650-785, gnl|canFam2|chr19 (55668236-55668099) | |
| 650-785, gnl|dasNov1|scaffold_16780 (4158-4243) | |
| 650-785, gnl|dasNov1|scaffold_16780 (4290-4159) | |
| 650-785, gnl|hg17|chr11 (75299752-75299893) | |
| 650-785, gnl|Hg17|chr12 (53260444-53260309) | |
| 650-785, gnl|hg17|chr16 (35004394-35004478) | |
| 650-785, gnl|loxAfr1|scaffold_25032 (12476-12389) | |
| 650-785, gnl|loxAfr1|scaffold_25032 (12342-12469) | |
| 650-785, gnl|mm7|chr15 (103519753-103519699) | |
| 650-785, gnl|mm7|chr15 (103519659-103519766) | |
| 650-785, gnl|Mm7|chr15 (103519768-103519657) | |
| 650-785, gnl|oryCun1|scaffold_182492 (10948-10863) | |
| 650-785, gnl|oryCun1|scaffold_182492 (10812-10947) | |
| 650-785, gnl|panTro1|chr18 (37059580-37059664) | |
| 650-785, gnl|panTro1|chr9 (76587626-76587767) | |
| 650-785, gnl|rheMac2|chr14 (74086429-74086346) | |
| 650-785, gnl|rheMac2|chr14 (74086288-74086428) | |
| 650-785, gnl|rn3|chr7 (142509718-142509823) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| sme (1.22175) | |
| ssp (0.948638) | |
| ldo (0.291008) | |
| nms (0.213858) | |
| mas (0.210305) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| bfe (0.149858) | |
| lin (0.145603) | |
| nca (0.136874) | |
| ste (0.135208) | |
| sug (0.127291) | |
| ese (0.126502) | |
| cly (0.120642) | |
| spc (0.113366) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sme (1.22175) | |
| ssp (0.948638) | |
| ldo (0.291008) | |
| nms (0.213858) | |
| mas (0.210305) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| bfe (0.149858) | |
| lin (0.145603) | |
| nca (0.136874) | |
| ste (0.135208) | |
| sug (0.127291) | |
| ese (0.126502) | |
| cly (0.120642) | |
| spc (0.113366) |