Non-Coding RNA Search

Ss1.1-unkn-05a09Ft3.5.5

Sequence:


               
               TCAATTGTCATATTTTATCATGGACGAATGAAGAAAGATGCTGAAACTAGAGGATTTTTT
CATCCATCAGAGCTTGATAAAATATTGGTGCACAGAAAACTTGGCAGTGGCTTTCTAGAG
GTGAATCTGGAGATGTGCTAAAATGAACAAATCATTTGAAATTAACCGCTTAACATATTT
TCTACATTTTGGATATCTAAATACTCAGAGAATATAAATATTCGGGCTACCCAGGTTCCT
GGGTGCACTGCTGTTTTATTTTCTGCTTCAACAGTTAGGTCAATAAACAAAGACCATTGA
AATTTTGGAATTCCAGAATTTCTGACAAAAATTGGTAGGGAGCCTGGAACTTAATGGCTG
GTGAAGGTTTTACAACCTGGGAACATCCTGCATTGATAATGGAAACACGTGAAAATATAA
AGAATCAAAAGAACGCCTATCATCTTTCACCTGTGAGTGAAACCCACTCTTTAATCCAAC
TACTAAAGCAGGTGCTCCTAGAATACTTGATTTCTCTGTATTTCCCAACTGGAAAATTAT
TTCATTTTCCTTGTGTTTGAAGCTTACATTCAATCACATTCCCAAGTCTTAGGATCCAAC
CCTGTTCCTCCTTTTATTTTTCGTAAGCAAAGGACTTGTTATTTTTGTAATACCAGAGTC
GTGTGATGAAATAAAAGCATCAGTTCAGTGTATCAGAGACATAGCAGGTTATCCAGCAGC
TGAAATAATAAAACTGAAGCTCTCTTTTTCTGAATTGGCCAGAAACCTGATGTGAAAGTT
TCCAGGAAACCAGACTGTAGTCTGTCCATTTTTAGTTAGGCTCTTGATGCTGAGTTGTTA
TCCCTGATGCATTAGTTGCTTTCAGTGGTGTTGGATGAGTTTTATTTTTATTTCCTATGT
TGTAAGAATGGTTATGAATAGAAGGTCCGGGACGGGAGAGAGAAATAAAATTCTAAGCAA
GGATGAGATGGTAGTAGAGTGTTATAAGTGAGGAGGTATAATTAATGTAATAAGGATGTG
AGAATGTACTGACTGACTGGTTCTATGATTTAAGGTAGAGCAATAATGATAATAAGTGTA
TTTTACAAACATGCACAAAGTAAATAGAGGTTTGCCTGGTTCATAGGTCCATTTTTTGCT
GGTTATCCTGGCCAAATATCTTCAGAATTCATCCAAGCTACTAGATAAAAGAAACTAAAA
TCATTTCGTTTAATTTTTTTTTCCCTGAGTTACAAAGAAATAAATTTATGTGACCTACTC
TGCATAAGTCATCTCTAAATAAGCTGGGTCTCCATCCCAGCCACTGATGGATATATCCTC
TAGCACAAGGCAACATTCAAAGGAATTATTTTTCAATATTTCTTTTCATACTTCGAAAAC
TATAACCTAGTTTCCTGAACACTCCTCCATGGTAATTATGAGAACTAAAGATTCGAAAGT
GTAACTATTTACCTACCATCCAGCACATCCAGAGGGTAAAGACCATTTAATGTCCCTCTC
AGGGAATTTGAAATCAAATACTATCTTGGAATACTCCTAAAAATCTTTGTGTTGATTCAG
CAACTTTTGGTTAAAAAAAAAAATTGTTTGCTTAAAACATTCTTGTACTATCTAAGGAAC
AATAAAAGGGGCATCGTGTTTGTAATTGCCTATCAATAAAGCTGCCTTCAATAAGCATTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAATTGTCATATTTTATCATGGACGAATGAAGAAAGATGCTGAAACTAGAGGATTTTTT
CATCCATCAGAGCTTGATAAAATATTGGTGCACAGAAAACTTGGCAGTGGCTTTCTAGAG
GTGAATCTGGAGATGTGCTAAAATGAACAAATCATTTGAAATTAACCGCTTAACATATTT
TCTACATTTTGGATATCTAAATACTCAGAGAATATAAATATTCGGGCTACCCAGGTTCCT
GGGTGCACTGCTGTTTTATTTTCTGCTTCAACAGTTAGGTCAATAAACAAAGACCATTGA
AATTTTGGAATTCCAGAATTTCTGACAAAAATTGGTAGGGAGCCTGGAACTTAATGGCTG
GTGAAGGTTTTACAACCTGGGAACATCCTGCATTGATAATGGAAACACGTGAAAATATAA
AGAATCAAAAGAACGCCTATCATCTTTCACCTGTGAGTGAAACCCACTCTTTAATCCAAC
TACTAAAGCAGGTGCTCCTAGAATACTTGATTTCTCTGTATTTCCCAACTGGAAAATTAT
TTCATTTTCCTTGTGTTTGAAGCTTACATTCAATCACATTCCCAAGTCTTAGGATCCAAC
CCTGTTCCTCCTTTTATTTTTCGTAAGCAAAGGACTTGTTATTTTTGTAATACCAGAGTC
GTGTGATGAAATAAAAGCATCAGTTCAGTGTATCAGAGACATAGCAGGTTATCCAGCAGC
TGAAATAATAAAACTGAAGCTCTCTTTTTCTGAATTGGCCAGAAACCTGATGTGAAAGTT
TCCAGGAAACCAGACTGTAGTCTGTCCATTTTTAGTTAGGCTCTTGATGCTGAGTTGTTA
TCCCTGATGCATTAGTTGCTTTCAGTGGTGTTGGATGAGTTTTATTTTTATTTCCTATGT
TGTAAGAATGGTTATGAATAGAAGGTCCGGGACGGGAGAGAGAAATAAAATTCTAAGCAA
GGATGAGATGGTAGTAGAGTGTTATAAGTGAGGAGGTATAATTAATGTAATAAGGATGTG
AGAATGTACTGACTGACTGGTTCTATGATTTAAGGTAGAGCAATAATGATAATAAGTGTA
TTTTACAAACATGCACAAAGTAAATAGAGGTTTGCCTGGTTCATAGGTCCATTTTTTGCT
GGTTATCCTGGCCAAATATCTTCAGAATTCATCCAAGCTACTAGATAAAAGAAACTAAAA
TCATTTCGTTTAATTTTTTTTTCCCTGAGTTACAAAGAAATAAATTTATGTGACCTACTC
TGCATAAGTCATCTCTAAATAAGCTGGGTCTCCATCCCAGCCACTGATGGATATATCCTC
TAGCACAAGGCAACATTCAAAGGAATTATTTTTCAATATTTCTTTTCATACTTCGAAAAC
TATAACCTAGTTTCCTGAACACTCCTCCATGGTAATTATGAGAACTAAAGATTCGAAAGT
GTAACTATTTACCTACCATCCAGCACATCCAGAGGGTAAAGACCATTTAATGTCCCTCTC
AGGGAATTTGAAATCAAATACTATCTTGGAATACTCCTAAAAATCTTTGTGTTGATTCAG
CAACTTTTGGTTAAAAAAAAAAATTGTTTGCTTAAAACATTCTTGTACTATCTAAGGAAC
AATAAAAGGGGCATCGTGTTTGTAATTGCCTATCAATAAAGCTGCCTTCAATAAGCATTG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               783-896, - strand, RNAz p=0.931231
               

               
               1272-1390, - strand, RNAz p=0.994453

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               783-896, - strand, RNAz p=0.931231
               

               
               1272-1390, - strand, RNAz p=0.994453

Similar Transcript(s): 4 entry(ies)

More info

Similar Transcript(s): 4 entry(ies)

Help | Less info


               
               803-896, CR737702 Homo sapiens library (Ebert L) Homo sapiens cDNA clone 
(emb|CR737702.1|), blast E-value=5e-16, identity=88.3% 
               

               
               803-896, 602152937F1 NIH_MGC_81 Homo sapiens cDNA clone IMAGE (gb|BF673041.1|), 
blast E-value=5e-16, identity=88.3% 
               

               
               803-896, 602081960F1 NIH_MGC_81 Homo sapiens cDNA clone IMAGE (gb|BF693610.1|), 
blast E-value=5e-16, identity=88.3% 
               

               
               783-896, POSM0100011_A10F porcine skeletal muscle cDNA library (PoSM) Sus 
(gb|BM190635.1|), blast E-value=0, identity=100%

Similar Transcript(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               803-896, CR737702 Homo sapiens library (Ebert L) Homo sapiens cDNA clone 
(emb|CR737702.1|), blast E-value=5e-16, identity=88.3% 
               

               
               803-896, 602152937F1 NIH_MGC_81 Homo sapiens cDNA clone IMAGE (gb|BF673041.1|), 
blast E-value=5e-16, identity=88.3% 
               

               
               803-896, 602081960F1 NIH_MGC_81 Homo sapiens cDNA clone IMAGE (gb|BF693610.1|), 
blast E-value=5e-16, identity=88.3% 
               

               
               783-896, POSM0100011_A10F porcine skeletal muscle cDNA library (PoSM) Sus 
(gb|BM190635.1|), blast E-value=0, identity=100%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1677, gnl|bosTau2|chr23 (5199306-5200972)
               

               
               1-1677, gnl|Hg17|chr6 (53622348-53620677)
               

               
               1-1677, gnl|Mm7|chr9 (77697169-77698639)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1677, gnl|bosTau2|chr23 (5199306-5200972)
               

               
               1-1677, gnl|Hg17|chr6 (53622348-53620677)
               

               
               1-1677, gnl|Mm7|chr9 (77697169-77698639)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

Help | Less info


               
               sme (1.52718)
               

               
               vin (1.33023)
               

               
               isp (1.20301)
               

               
               tbr (0.770891)
               

               
               bfe (0.599431)
               

               
               ssp (0.542079)
               

               
               nms (0.427716)
               

               
               ctl (0.306138)
               

               
               ldo (0.291008)
               

               
               ste (0.270416)
               

               
               hea (0.204499)
               

               
               rec (0.17307)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               thg (0.126791)
               

               
               ese (0.126502)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (1.52718)
               

               
               vin (1.33023)
               

               
               isp (1.20301)
               

               
               tbr (0.770891)
               

               
               bfe (0.599431)
               

               
               ssp (0.542079)
               

               
               nms (0.427716)
               

               
               ctl (0.306138)
               

               
               ldo (0.291008)
               

               
               ste (0.270416)
               

               
               hea (0.204499)
               

               
               rec (0.17307)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               thg (0.126791)
               

               
               ese (0.126502)

	783-896, - strand, RNAz p=0.931231
	1272-1390, - strand, RNAz p=0.994453

	803-896, CR737702 Homo sapiens library (Ebert L) Homo sapiens cDNA clone (emb\|CR737702.1\|), blast E-value=5e-16, identity=88.3%
	803-896, 602152937F1 NIH_MGC_81 Homo sapiens cDNA clone IMAGE (gb\|BF673041.1\|), blast E-value=5e-16, identity=88.3%
	803-896, 602081960F1 NIH_MGC_81 Homo sapiens cDNA clone IMAGE (gb\|BF693610.1\|), blast E-value=5e-16, identity=88.3%
	783-896, POSM0100011_A10F porcine skeletal muscle cDNA library (PoSM) Sus (gb\|BM190635.1\|), blast E-value=0, identity=100%

	1-1677, gnl\|bosTau2\|chr23 (5199306-5200972)
	1-1677, gnl\|Hg17\|chr6 (53622348-53620677)
	1-1677, gnl\|Mm7\|chr9 (77697169-77698639)

	sme (1.52718)
	vin (1.33023)
	isp (1.20301)
	tbr (0.770891)
	bfe (0.599431)
	ssp (0.542079)
	nms (0.427716)
	ctl (0.306138)
	ldo (0.291008)
	ste (0.270416)
	hea (0.204499)
	rec (0.17307)
	hlv (0.139256)
	che (0.136314)
	thg (0.126791)
	ese (0.126502)