Non-Coding RNA Search

Ss1.1-unkn-08B09Ft3.5

Sequence:


               
               AATATGTGATTAGTGAGGAGAATGGAAGTCATACCCTTAAAATCCGCAATGTTGGTCTGT
CCGATAGTGCCACGTACAGGTGCAGAGCTATGAATCGTGTAGGGGAGGCCATCTGTCGGG
GGTTCCTTACCATGGGAGATTCTGAAATGTTGGCTCTGATGGCAAAGAAAAGCAAAGTGA
CTCTAAGCAGTTTGAAGGAAGAATTAGTCTTGAAGAGAAAATACGCAGATAGCTTCTTTG
AATTTCAGGTGATGGAAGGGCCTCCCAGGTTTATTAAAGGCATTTCCGACTGTTGTGCAC
CGTTAGGTACAGCAGCTTATTTCCAGTGTTTAGTCCGTGGCTCTCCAAGGCCCACCGTTT
ACTGGTACAAAGATGGGAAGTTGGTGCAAGGAGCAAGATTCAGTGCTGAGGAAAGTGGCA
TAGGGTTCCACAACCTATTCATAACAGGCTTAGTAAAAGATGATGAAGGTGAGTACAGGT
GTGTGGCTACAAACAAATCAGGCATGGCTGAGGCCTATGCAGTGCTCAGCCTCACTTAAA
GTTCCTTGTAGTGCCTCCACACTGATGAGAATTGACCTGAGTGCTTTCACATTTTCCAAA
TTATATACATCTAAGAAATTTACAAGTACGTCTACTCTTGGAACACATGACATTGAAAAC
CCCCGGGGAAAAGTTTCTCTATGTGGAGATATCCTTTTGTCTCACCTGTAAATATCCTGT
TATCTAAACTGTGGAATGATCACCTGTGTCAGTTCTGCTGTCAATCATCAAACACTATTA
AACATCTCCTTGGCCACCTAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATATGTGATTAGTGAGGAGAATGGAAGTCATACCCTTAAAATCCGCAATGTTGGTCTGT
CCGATAGTGCCACGTACAGGTGCAGAGCTATGAATCGTGTAGGGGAGGCCATCTGTCGGG
GGTTCCTTACCATGGGAGATTCTGAAATGTTGGCTCTGATGGCAAAGAAAAGCAAAGTGA
CTCTAAGCAGTTTGAAGGAAGAATTAGTCTTGAAGAGAAAATACGCAGATAGCTTCTTTG
AATTTCAGGTGATGGAAGGGCCTCCCAGGTTTATTAAAGGCATTTCCGACTGTTGTGCAC
CGTTAGGTACAGCAGCTTATTTCCAGTGTTTAGTCCGTGGCTCTCCAAGGCCCACCGTTT
ACTGGTACAAAGATGGGAAGTTGGTGCAAGGAGCAAGATTCAGTGCTGAGGAAAGTGGCA
TAGGGTTCCACAACCTATTCATAACAGGCTTAGTAAAAGATGATGAAGGTGAGTACAGGT
GTGTGGCTACAAACAAATCAGGCATGGCTGAGGCCTATGCAGTGCTCAGCCTCACTTAAA
GTTCCTTGTAGTGCCTCCACACTGATGAGAATTGACCTGAGTGCTTTCACATTTTCCAAA
TTATATACATCTAAGAAATTTACAAGTACGTCTACTCTTGGAACACATGACATTGAAAAC
CCCCGGGGAAAAGTTTCTCTATGTGGAGATATCCTTTTGTCTCACCTGTAAATATCCTGT
TATCTAAACTGTGGAATGATCACCTGTGTCAGTTCTGCTGTCAATCATCAAACACTATTA
AACATCTCCTTGGCCACCTAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-797, gnl|bosTau2|chr2 (7665854-7666664)
               

               
               1-797, gnl|Hg17|chr2 (179436356-179435555)
               

               
               1-797, gnl|Mm7|chr2 (76758431-76757661)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-797, gnl|bosTau2|chr2 (7665854-7666664)
               

               
               1-797, gnl|Hg17|chr2 (179436356-179435555)
               

               
               1-797, gnl|Mm7|chr2 (76758431-76757661)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nms (0.427716)
               

               
               hea (0.408998)
               

               
               ctl (0.153069)
               

               
               jca (0.11396)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.427716)
               

               
               hea (0.408998)
               

               
               ctl (0.153069)
               

               
               jca (0.11396)

	1-797, gnl\|bosTau2\|chr2 (7665854-7666664)
	1-797, gnl\|Hg17\|chr2 (179436356-179435555)
	1-797, gnl\|Mm7\|chr2 (76758431-76757661)