Ss1.1-unkn-09B06ft7.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAGATGGCGAAGGTCTCGGAGCTTTACGATGTCACTTGGGAAGAAATGCGAGATAAAAT GAGAAAATGGAGAGAAGAAAACTCACGAAATAGTGAGCAAATTGTGGAAGTTGGAGAGGA ATTAATTAATGAATATGCTTCTAAGCTTGGAGATGATATTTGGATCATATATGAACAGGT GATGATTGCAGCCTTAGACTATGGTCGGGATGACTTGGCATTGTTTTGTCTTCAGGAATT GAGAAGACAATTCCCTGGCAGTCACAGAGTCAAGAGACTAACTGGCATGAGATTTGAAGC CATGGAGAGATATGATGATGCTATACAGCTGTATGATCGAATTTTACAAGAAGATCCAAC AAATACTGCTGCAAGAAAGCGTAAGATTGCCATTCGAAAAGCCCAGGGGAAAAATGTGGA GGCCATTCGGGAACTGAATGAGTATCTGGAACAATTTGTTGGAGACCAGGAAGCCTGGCA TGAACTTGCAGAACTTTATATCAATGAACATGACTATGCTAAAGCAGCCTTTTGTTTAGA GGAACTTATGATGACTAATCCACACAATCACTTATATTGTCAGCAGTATGCTGAAGTTAA ATATACTCAAGGTGGACTTGAAAATCTCGAACTTTCAAGAAAGTATTTTGCACAGGCATT GAAACTGAACAACAGAAACATGAGAGCTTTGTTTGGACTTTACATGTCTGCAAGTCATAT TGCTTCTAATCCAAAAGCAAGTGCAAAAACAAAAAAGGACAACATGAAATATGCTAGTTG GGCAGCTAGTCAAATAAACAGAGCTTATCAGTTTGCAGGTCGAAGTAAGAAGGAAACCAA ATACTCTCTCAAGGCAGTTGAAGATATGTTGGAAACACTGCAGATCACCCAGTCTTAAGG TTTCAAAAACTCTTTCACGTTACATTTCTCCCCTGCAAAATTGAACTCACTGGCTTGTGA CTTATTTACTAATGCCAGTGCTATTTATATACTGATCTGACACCTTGAAGGCAGTTGTAA AGAGTGTGTTTATATAAGCCTAAAATGCCATTTACTGCTATGCAGGAATATGTGGAAAAT CCATGAAAGAGATTTAGCAAGATTCTTACTGATTGTACATCATTCTTGCACGTCACACAT AAATAATTGCTTTTAAACCACAGTCTTATATAGAAATAACCTTGTTAAATAAACTGATAA TTTATTGAACTTACATGTGAAAATTCTAGATTTTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAGATGGCGAAGGTCTCGGAGCTTTACGATGTCACTTGGGAAGAAATGCGAGATAAAAT GAGAAAATGGAGAGAAGAAAACTCACGAAATAGTGAGCAAATTGTGGAAGTTGGAGAGGA ATTAATTAATGAATATGCTTCTAAGCTTGGAGATGATATTTGGATCATATATGAACAGGT GATGATTGCAGCCTTAGACTATGGTCGGGATGACTTGGCATTGTTTTGTCTTCAGGAATT GAGAAGACAATTCCCTGGCAGTCACAGAGTCAAGAGACTAACTGGCATGAGATTTGAAGC CATGGAGAGATATGATGATGCTATACAGCTGTATGATCGAATTTTACAAGAAGATCCAAC AAATACTGCTGCAAGAAAGCGTAAGATTGCCATTCGAAAAGCCCAGGGGAAAAATGTGGA GGCCATTCGGGAACTGAATGAGTATCTGGAACAATTTGTTGGAGACCAGGAAGCCTGGCA TGAACTTGCAGAACTTTATATCAATGAACATGACTATGCTAAAGCAGCCTTTTGTTTAGA GGAACTTATGATGACTAATCCACACAATCACTTATATTGTCAGCAGTATGCTGAAGTTAA ATATACTCAAGGTGGACTTGAAAATCTCGAACTTTCAAGAAAGTATTTTGCACAGGCATT GAAACTGAACAACAGAAACATGAGAGCTTTGTTTGGACTTTACATGTCTGCAAGTCATAT TGCTTCTAATCCAAAAGCAAGTGCAAAAACAAAAAAGGACAACATGAAATATGCTAGTTG GGCAGCTAGTCAAATAAACAGAGCTTATCAGTTTGCAGGTCGAAGTAAGAAGGAAACCAA ATACTCTCTCAAGGCAGTTGAAGATATGTTGGAAACACTGCAGATCACCCAGTCTTAAGG TTTCAAAAACTCTTTCACGTTACATTTCTCCCCTGCAAAATTGAACTCACTGGCTTGTGA CTTATTTACTAATGCCAGTGCTATTTATATACTGATCTGACACCTTGAAGGCAGTTGTAA AGAGTGTGTTTATATAAGCCTAAAATGCCATTTACTGCTATGCAGGAATATGTGGAAAAT CCATGAAAGAGATTTAGCAAGATTCTTACTGATTGTACATCATTCTTGCACGTCACACAT AAATAATTGCTTTTAAACCACAGTCTTATATAGAAATAACCTTGTTAAATAAACTGATAA TTTATTGAACTTACATGTGAAAATTCTAGATTTTTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 596-706, gnl|bosTau2|chr14 (34948919-34948809) | |
| 596-706, gnl|canFam2|chr13 (12140728-12140867) | |
| 596-706, gnl|danRer3|chr1 (48821403-48821537) | |
| 596-706, gnl|dasNov1|scaffold_22222 (44780-44644) | |
| 596-706, gnl|echTel1|scaffold_309021 (3013-2875) | |
| 596-706, gnl|fr1|chrUn (140608389-140608509) | |
| 596-706, gnl|galGal2|chr2 (130729405-130729543) | |
| 596-706, gnl|hg17|chr8 (109558165-109558304) | |
| 596-706, gnl|Hg17|chr8 (109558187-109558297) | |
| 596-706, gnl|loxAfr1|scaffold_1097 (139374-139513) | |
| 596-706, gnl|mm7|chr15 (43556624-43556763) | |
| 596-706, gnl|Mm7|chr15 (43556646-43556756) | |
| 596-706, gnl|monDom2|scaffold_3 (52922413-52922275) | |
| 596-706, gnl|oryCun1|scaffold_81424 (5198-5106) | |
| 596-706, gnl|panTro1|chr7 (112039150-112039289) | |
| 596-706, gnl|rheMac2|chr8 (110886719-110886858) | |
| 596-706, gnl|rn3|chr7 (79310873-79311012) | |
| 596-706, gnl|tetNig1|chr8 (1989990-1989871) | |
| 596-706, gnl|xenTro1|scaffold_651 (724334-724468) | |
| 807-1235, gnl|bosTau2|chr14 (34937332-34936898) | |
| 807-1235, gnl|Hg17|chr8 (109567912-109568343) | |
| 807-1235, gnl|Mm7|chr15 (43572338-43572730) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 596-706, gnl|bosTau2|chr14 (34948919-34948809) | |
| 596-706, gnl|canFam2|chr13 (12140728-12140867) | |
| 596-706, gnl|danRer3|chr1 (48821403-48821537) | |
| 596-706, gnl|dasNov1|scaffold_22222 (44780-44644) | |
| 596-706, gnl|echTel1|scaffold_309021 (3013-2875) | |
| 596-706, gnl|fr1|chrUn (140608389-140608509) | |
| 596-706, gnl|galGal2|chr2 (130729405-130729543) | |
| 596-706, gnl|hg17|chr8 (109558165-109558304) | |
| 596-706, gnl|Hg17|chr8 (109558187-109558297) | |
| 596-706, gnl|loxAfr1|scaffold_1097 (139374-139513) | |
| 596-706, gnl|mm7|chr15 (43556624-43556763) | |
| 596-706, gnl|Mm7|chr15 (43556646-43556756) | |
| 596-706, gnl|monDom2|scaffold_3 (52922413-52922275) | |
| 596-706, gnl|oryCun1|scaffold_81424 (5198-5106) | |
| 596-706, gnl|panTro1|chr7 (112039150-112039289) | |
| 596-706, gnl|rheMac2|chr8 (110886719-110886858) | |
| 596-706, gnl|rn3|chr7 (79310873-79311012) | |
| 596-706, gnl|tetNig1|chr8 (1989990-1989871) | |
| 596-706, gnl|xenTro1|scaffold_651 (724334-724468) | |
| 807-1235, gnl|bosTau2|chr14 (34937332-34936898) | |
| 807-1235, gnl|Hg17|chr8 (109567912-109568343) | |
| 807-1235, gnl|Mm7|chr15 (43572338-43572730) |
| Expressed library(ies): 27 entry(ies) | More info |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
| sin (0.524843) | |
| cbe (0.478469) | |
| vin (0.332557) | |
| tbr (0.308356) | |
| isp (0.300752) | |
| ski (0.29347) | |
| ldo (0.291008) | |
| pty (0.285429) | |
| ssp (0.271039) | |
| ste (0.270416) | |
| ova (0.258264) | |
| mgp (0.230681) | |
| ece (0.229305) | |
| spc (0.226732) | |
| mas (0.210305) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| mgm (0.180343) | |
| ill (0.175593) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| lin (0.145603) | |
| kid (0.129735) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| eje (0.0988338) |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sin (0.524843) | |
| cbe (0.478469) | |
| vin (0.332557) | |
| tbr (0.308356) | |
| isp (0.300752) | |
| ski (0.29347) | |
| ldo (0.291008) | |
| pty (0.285429) | |
| ssp (0.271039) | |
| ste (0.270416) | |
| ova (0.258264) | |
| mgp (0.230681) | |
| ece (0.229305) | |
| spc (0.226732) | |
| mas (0.210305) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| mgm (0.180343) | |
| ill (0.175593) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| lin (0.145603) | |
| kid (0.129735) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| eje (0.0988338) |