Non-Coding RNA Search

Ss1.1-unkn-09a06Bt3.5

Sequence:


               
               TGGACTTCTCACATGAATGACTGAATCCCTCGCACCTGCTCAAACCCACTTTCTAGCTCC
CATCTTAGAGCTAATGACACCACCGATCCATTCAGTTGCTGGCTAGAAGCCTTGGTGCCA
TCTTGGATTTTCAATTCCCCTCTCCACGTCACATCCAAGCCAGCAAATTCTACAGGGCTC
TCCTCAGTCCTGAGCACTGCTCACCACCTCCACTAACAGTCACCCTAGCCCAGGCAGTCA
TCTCCTCTCACCTGGATTATTGCAAGAGTCTCTTTAAGTCGTCTCCCTGCTTCTGCCTCT
GCCCCCTACCATCCATTCTCCATACAGCAGCTAGAAGCATCTTTTAAGAGTGTAACCTGG
ATCACCTCACTTCCATAATCAAACCCTCCCCTAAAAGCTCCTCATTACATTCAGAATAAT
CTCAACCACCTTCTTATGGCTAGATGATCCTACATTGTCTGGTTTCTGTCTCCCTCCCTG
ACTTCATCACTCACCACTCTCCCCCTCGTTCACTATGTTCTCTCCTTACTAGTCTTTCTG
ACCCTCAGACACATACAGCTGGTTCCTGTCATAAGGCCTTTCTACCTGTTCTTCCCTTAG
TCTGGGAATTCTCCAGATTTCCTTATCACTCAATTCTCAGTTCATCTCACAGAGGCCCGC
CCAGACCCCAAATAAAGAAGTTTTTATCCCATTACACTCTTCTATTATTTTTTTCATAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGACTTCTCACATGAATGACTGAATCCCTCGCACCTGCTCAAACCCACTTTCTAGCTCC
CATCTTAGAGCTAATGACACCACCGATCCATTCAGTTGCTGGCTAGAAGCCTTGGTGCCA
TCTTGGATTTTCAATTCCCCTCTCCACGTCACATCCAAGCCAGCAAATTCTACAGGGCTC
TCCTCAGTCCTGAGCACTGCTCACCACCTCCACTAACAGTCACCCTAGCCCAGGCAGTCA
TCTCCTCTCACCTGGATTATTGCAAGAGTCTCTTTAAGTCGTCTCCCTGCTTCTGCCTCT
GCCCCCTACCATCCATTCTCCATACAGCAGCTAGAAGCATCTTTTAAGAGTGTAACCTGG
ATCACCTCACTTCCATAATCAAACCCTCCCCTAAAAGCTCCTCATTACATTCAGAATAAT
CTCAACCACCTTCTTATGGCTAGATGATCCTACATTGTCTGGTTTCTGTCTCCCTCCCTG
ACTTCATCACTCACCACTCTCCCCCTCGTTCACTATGTTCTCTCCTTACTAGTCTTTCTG
ACCCTCAGACACATACAGCTGGTTCCTGTCATAAGGCCTTTCTACCTGTTCTTCCCTTAG
TCTGGGAATTCTCCAGATTTCCTTATCACTCAATTCTCAGTTCATCTCACAGAGGCCCGC
CCAGACCCCAAATAAAGAAGTTTTTATCCCATTACACTCTTCTATTATTTTTTTCATAAT

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               3-287, gnl|bosTau2|chr22 (14276910-14276650)
               

               
               3-287, gnl|canFam2|chr23 (14863661-14864023)
               

               
               3-287, gnl|echTel1|scaffold_316638 (50129-49719)
               

               
               3-287, gnl|hg17|chr3 (42710528-42710910)
               

               
               3-287, gnl|Hg17|chr3 (42710641-42710904)
               

               
               3-287, gnl|mm7|chr9 (121485954-121486302)
               

               
               3-287, gnl|Mm7|chr9 (121486061-121486293)
               

               
               3-287, gnl|oryCun1|scaffold_213366 (52191-52530)
               

               
               3-287, gnl|panTro1|chr2 (43915622-43916004)
               

               
               3-287, gnl|rheMac2|chr2 (93877646-93877264)
               

               
               3-287, gnl|rn3|chr8 (127171821-127171504)
               


               
               337-719, gnl|bosTau2|chr22 (14276247-14275877)
               

               
               337-719, gnl|Hg17|chr3 (42710970-42711373)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-287, gnl|bosTau2|chr22 (14276910-14276650)
               

               
               3-287, gnl|canFam2|chr23 (14863661-14864023)
               

               
               3-287, gnl|echTel1|scaffold_316638 (50129-49719)
               

               
               3-287, gnl|hg17|chr3 (42710528-42710910)
               

               
               3-287, gnl|Hg17|chr3 (42710641-42710904)
               

               
               3-287, gnl|mm7|chr9 (121485954-121486302)
               

               
               3-287, gnl|Mm7|chr9 (121486061-121486293)
               

               
               3-287, gnl|oryCun1|scaffold_213366 (52191-52530)
               

               
               3-287, gnl|panTro1|chr2 (43915622-43916004)
               

               
               3-287, gnl|rheMac2|chr2 (93877646-93877264)
               

               
               3-287, gnl|rn3|chr8 (127171821-127171504)
               


               
               337-719, gnl|bosTau2|chr22 (14276247-14275877)
               

               
               337-719, gnl|Hg17|chr3 (42710970-42711373)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ldo (0.0970026)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.0970026)

	3-287, gnl\|bosTau2\|chr22 (14276910-14276650)
	3-287, gnl\|canFam2\|chr23 (14863661-14864023)
	3-287, gnl\|echTel1\|scaffold_316638 (50129-49719)
	3-287, gnl\|hg17\|chr3 (42710528-42710910)
	3-287, gnl\|Hg17\|chr3 (42710641-42710904)
	3-287, gnl\|mm7\|chr9 (121485954-121486302)
	3-287, gnl\|Mm7\|chr9 (121486061-121486293)
	3-287, gnl\|oryCun1\|scaffold_213366 (52191-52530)
	3-287, gnl\|panTro1\|chr2 (43915622-43916004)
	3-287, gnl\|rheMac2\|chr2 (93877646-93877264)
	3-287, gnl\|rn3\|chr8 (127171821-127171504)

	337-719, gnl\|bosTau2\|chr22 (14276247-14275877)
	337-719, gnl\|Hg17\|chr3 (42710970-42711373)