Non-Coding RNA Search

Ss1.1-unkn-10A06At3.5

Sequence:


               
               AGAAGGCAAAAAAGGAAAAGAAGAAAAAAATGAATGAAAAAAGGAAAAGAGAAGAGGGTT
CTGATATCAACGATGAGGACATGGAGGAACTTCTCAATGACACCAGGCTCTTGAAAAAGT
TTAAAAAAGGCAAAATTACTGAAGAAGAATTCGAGAAGAGGCTGTTGACAGGTGGCAAAA
GATCAGTCAAGACAGCAGGTTTAGGGATCTCAGATTCGGAAGATGACGTCTGATTCCCGT
CCCCCCAGTGAAATGCAGGAGGGCAAGGGACCTGTGAGCTGGCCCCGTGCGCTGCAGCAG
CCAGTCCTTGTTTGCTCCTACTCGGCATCAGAACCCCAGTGGCCAGCTCAAAGCTGCTGC
TGCAGACTGGGGAGACAGGAGGGGTTTCATGCTCATGGATATTTTATTAAAAACACACCA
GCCTGGCAGAAGAAAATGTAAAATTACTTGAGTGTAAATAACAGATGTCAGTATTTATTT
TGATGGGTTACTTCAAGAGCTCATTTACTTGGGGCTATTTTATGCTTATTTTTTAACATA
AAGATCATGCAGTAGACTTGACTTTAGGTCTTTTAAAGTTCCTCAGTGTTTTTAGACACC
TGACCTCCCTAGGTGTCCTCACCCCCTGGATGTCAGTTCTCTTGGGATGTCCTACACAGA
GCCCCTGCACAGTCTCTAGTATTGTTTTGTTGGTGAGTATCTGAAAAACAGGAAGTCATT
CTGGGAAAGAAAACTCTTACGCCTTCTGCTGAATAAACTGTATTTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAGGCAAAAAAGGAAAAGAAGAAAAAAATGAATGAAAAAAGGAAAAGAGAAGAGGGTT
CTGATATCAACGATGAGGACATGGAGGAACTTCTCAATGACACCAGGCTCTTGAAAAAGT
TTAAAAAAGGCAAAATTACTGAAGAAGAATTCGAGAAGAGGCTGTTGACAGGTGGCAAAA
GATCAGTCAAGACAGCAGGTTTAGGGATCTCAGATTCGGAAGATGACGTCTGATTCCCGT
CCCCCCAGTGAAATGCAGGAGGGCAAGGGACCTGTGAGCTGGCCCCGTGCGCTGCAGCAG
CCAGTCCTTGTTTGCTCCTACTCGGCATCAGAACCCCAGTGGCCAGCTCAAAGCTGCTGC
TGCAGACTGGGGAGACAGGAGGGGTTTCATGCTCATGGATATTTTATTAAAAACACACCA
GCCTGGCAGAAGAAAATGTAAAATTACTTGAGTGTAAATAACAGATGTCAGTATTTATTT
TGATGGGTTACTTCAAGAGCTCATTTACTTGGGGCTATTTTATGCTTATTTTTTAACATA
AAGATCATGCAGTAGACTTGACTTTAGGTCTTTTAAAGTTCCTCAGTGTTTTTAGACACC
TGACCTCCCTAGGTGTCCTCACCCCCTGGATGTCAGTTCTCTTGGGATGTCCTACACAGA
GCCCCTGCACAGTCTCTAGTATTGTTTTGTTGGTGAGTATCTGAAAAACAGGAAGTCATT
CTGGGAAAGAAAACTCTTACGCCTTCTGCTGAATAAACTGTATTTCCT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               273-373, - strand, RNAz p=0.669325
               

               
               498-641, - strand, RNAz p=0.967381

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               273-373, - strand, RNAz p=0.669325
               

               
               498-641, - strand, RNAz p=0.967381

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               55-766, gnl|bosTau2|chr17 (26589399-26590131)
               

               
               55-766, gnl|Hg17|chr12 (122629389-122630358)
               


               
               74-493, gnl|bosTau2|chr12 (2756028-2756451)
               

               
               74-493, gnl|Hg17|chr12 (122629408-122629989)
               

               
               74-493, gnl|Mm7|chr5 (123814436-123814791)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               55-766, gnl|bosTau2|chr17 (26589399-26590131)
               

               
               55-766, gnl|Hg17|chr12 (122629389-122630358)
               


               
               74-493, gnl|bosTau2|chr12 (2756028-2756451)
               

               
               74-493, gnl|Hg17|chr12 (122629408-122629989)
               

               
               74-493, gnl|Mm7|chr5 (123814436-123814791)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               hea (0.204499)
               

               
               sto (0.179824)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               thg (0.126791)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               sto (0.179824)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               thg (0.126791)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	273-373, - strand, RNAz p=0.669325
	498-641, - strand, RNAz p=0.967381

	55-766, gnl\|bosTau2\|chr17 (26589399-26590131)
	55-766, gnl\|Hg17\|chr12 (122629389-122630358)

	74-493, gnl\|bosTau2\|chr12 (2756028-2756451)
	74-493, gnl\|Hg17\|chr12 (122629408-122629989)
	74-493, gnl\|Mm7\|chr5 (123814436-123814791)

	hea (0.204499)
	sto (0.179824)
	cje (0.165235)
	nco (0.161734)
	csk (0.140746)
	ste (0.135208)
	thg (0.126791)
	spc (0.113366)
	ldo (0.0970026)