Ss1.1-unkn-10A07et3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACTGTCCCAGCTGCCACCTCTACTCCGGAGCCCAGCGAAGACATCCCAGCCATGGCCAT GCAGAAAATCTTTGCCCGCGAAATCCTGGACTCCAGGGGCAACCCCACAGTGGAGGTGGA CCTGCACACGGCCAAGGGCCGATTCCGAGCTGCTGTGCCCAGCGGGGCTTCCACGGGTAT CTATGAAGCTCTAGAACTGAGAGATGGAGACAAATCTCGCTACCTGGGCAAAGGGGTCCT GAAGGCTGTGGAACACATCAACAAGACTCTGGGCCCCGCGCTGCTGGAAAAGAAACTAAG TGTGGTGGATCAAGAAAAAGTGGACAAATTTATGATCGAGCTGGATGGGACAGAAAATAA GTCCAAGTTTGGGGCCAATGCCATCCTGGGCGTGTCCCTGGCTGTGTGCAAGGCCGGAGC AGCCGAGAAGGGGGTCCCACTCTACCGTCACATTGCAGATCTCGCCGGCAACCCAGACCT GGTCCTCCCCGTCCCTGCCTTCAATGTGATCAATGGGGGTTCCCATGCGGGAAATAAGCT GGCCATGCAGGAGTTCATGATCCTGCCTGTGGGAGCCAGCTCCTTCAGGGAAGCCATGCG CATCGGCGCCGAGGTCTACCACCACCTCAAGGGGGTCATCAAGGGCAAATACGGGAAGGA CGCCACCAATGTGGGAGATGAGGGCGGCTTTGCACCCAACATCCTGGAGAACAATGAAGC CCTGGAGCTGCTGAAGACGGCCATCCAGGCAGCTGGTTACCCCGACAAGGTGGTGATCGG CATGGATGTGGCGGCATCTGAGTTCTACCGCAACGGGAAGTATGATCTCGACTTCAAGTC ACCTGACGACCCCTCCCGGCACATCACCGGGGAGAAGCTGGGGGAGCTGTACAAGAGTTT CATCAAGAACTATCCTGTGGTCTCCATTGAGGACCCTTTTGACCAGGATGACTGGAAGAC CTGGACCTCCTTCCTCTCGGGGGTCAACATCCAGATCGTGGGGGATGACCTCACAGTCAC CAACCCTAAGAGGATTGCCCAGGCAGTTGAGAAGAAGGCCTGCAACTGCCTGCTGCTGAA GGTCAACCAGATCGGCTCTGTGACTGAATCTATCCAGGCCTGCAAACTGGCTCAGTCTAA CGGCTGGGGGGTGATGGTGAGCCACCGCTCCGGGGAGACGGAGGACACGTTCATCGCCGA CCTCGTGGTGGGGCTTTGCACGGGACAGATCAAGACCGGTGCCCCCTGCCGCTCAGAGCG TCTGGCCAAATACAACCAGCTCATGAGGATTGAGGAGGCTCTTGGGGACAAGGCTGTCTT CGCTGGACGCAAGTTCCGTAACCCAAAGGCCAAGTGAGAAGGTGGAAGCCCCTGGAGCCC GCAGGGCAGATCTGGGCCTTCAAGCCCTTCCCCCGAAATAAACACTGGTGCCAACCAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACTGTCCCAGCTGCCACCTCTACTCCGGAGCCCAGCGAAGACATCCCAGCCATGGCCAT GCAGAAAATCTTTGCCCGCGAAATCCTGGACTCCAGGGGCAACCCCACAGTGGAGGTGGA CCTGCACACGGCCAAGGGCCGATTCCGAGCTGCTGTGCCCAGCGGGGCTTCCACGGGTAT CTATGAAGCTCTAGAACTGAGAGATGGAGACAAATCTCGCTACCTGGGCAAAGGGGTCCT GAAGGCTGTGGAACACATCAACAAGACTCTGGGCCCCGCGCTGCTGGAAAAGAAACTAAG TGTGGTGGATCAAGAAAAAGTGGACAAATTTATGATCGAGCTGGATGGGACAGAAAATAA GTCCAAGTTTGGGGCCAATGCCATCCTGGGCGTGTCCCTGGCTGTGTGCAAGGCCGGAGC AGCCGAGAAGGGGGTCCCACTCTACCGTCACATTGCAGATCTCGCCGGCAACCCAGACCT GGTCCTCCCCGTCCCTGCCTTCAATGTGATCAATGGGGGTTCCCATGCGGGAAATAAGCT GGCCATGCAGGAGTTCATGATCCTGCCTGTGGGAGCCAGCTCCTTCAGGGAAGCCATGCG CATCGGCGCCGAGGTCTACCACCACCTCAAGGGGGTCATCAAGGGCAAATACGGGAAGGA CGCCACCAATGTGGGAGATGAGGGCGGCTTTGCACCCAACATCCTGGAGAACAATGAAGC CCTGGAGCTGCTGAAGACGGCCATCCAGGCAGCTGGTTACCCCGACAAGGTGGTGATCGG CATGGATGTGGCGGCATCTGAGTTCTACCGCAACGGGAAGTATGATCTCGACTTCAAGTC ACCTGACGACCCCTCCCGGCACATCACCGGGGAGAAGCTGGGGGAGCTGTACAAGAGTTT CATCAAGAACTATCCTGTGGTCTCCATTGAGGACCCTTTTGACCAGGATGACTGGAAGAC CTGGACCTCCTTCCTCTCGGGGGTCAACATCCAGATCGTGGGGGATGACCTCACAGTCAC CAACCCTAAGAGGATTGCCCAGGCAGTTGAGAAGAAGGCCTGCAACTGCCTGCTGCTGAA GGTCAACCAGATCGGCTCTGTGACTGAATCTATCCAGGCCTGCAAACTGGCTCAGTCTAA CGGCTGGGGGGTGATGGTGAGCCACCGCTCCGGGGAGACGGAGGACACGTTCATCGCCGA CCTCGTGGTGGGGCTTTGCACGGGACAGATCAAGACCGGTGCCCCCTGCCGCTCAGAGCG TCTGGCCAAATACAACCAGCTCATGAGGATTGAGGAGGCTCTTGGGGACAAGGCTGTCTT CGCTGGACGCAAGTTCCGTAACCCAAAGGCCAAGTGAGAAGGTGGAAGCCCCTGGAGCCC GCAGGGCAGATCTGGGCCTTCAAGCCCTTCCCCCGAAATAAACACTGGTGCCAACCAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 626-1404, - strand, RNAz p=0.908261 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 626-1404, - strand, RNAz p=0.908261 |
| Aligned organism(s): 61 entry(ies) | More info |
| Aligned organism(s): 61 entry(ies) | Help | Less info |
| 143-840, gnl|bosTau2|chr1 (78694262-78693572) | |
| 143-840, gnl|Hg17|chr12 (6895847-6899123) | |
| 143-840, gnl|Mm7|chr6 (124793961-124789962) | |
| 363-495, gnl|bosTau2|chr16 (31517158-31517026) | |
| 363-495, gnl|canFam2|chr5 (65304522-65304674) | |
| 363-495, gnl|danRer3|chr23 (31180052-31179906) | |
| 363-495, gnl|dasNov1|scaffold_27589 (7000-7155) | |
| 363-495, gnl|echTel1|scaffold_66085 (4819-4689) | |
| 363-495, gnl|fr1|chrUn (277307331-277307179) | |
| 363-495, gnl|galGal2|chr21 (3070612-3070766) | |
| 363-495, gnl|hg17|chr1 (8861436-8861591) | |
| 363-495, gnl|Hg17|chr1 (8861575-8861443) | |
| 363-495, gnl|loxAfr1|scaffold_6718 (74436-74591) | |
| 363-495, gnl|mm7|chr4 (149233924-149233769) | |
| 363-495, gnl|Mm7|chr4 (149233783-149233915) | |
| 363-495, gnl|monDom2|scaffold_148 (816658-816503) | |
| 363-495, gnl|oryCun1|scaffold_184064 (13861-13706) | |
| 363-495, gnl|panTro1|chr1 (8868550-8868705) | |
| 363-495, gnl|rheMac2|chr1 (11906095-11906250) | |
| 363-495, gnl|rn3|chr5 (167411963-167411808) | |
| 363-495, gnl|tetNig1|chrUn_random (46515680-46515531) | |
| 363-495, gnl|xenTro1|scaffold_464 (885883-886039) | |
| 497-719, gnl|bosTau2|chr16 (31516642-31516420) | |
| 497-719, gnl|canFam2|chr1 (81475348-81475551) | |
| 497-719, gnl|canFam2|chrX (12244301-12244521) | |
| 497-719, gnl|danRer3|chr22 (35428761-35428570) | |
| 497-719, gnl|danRer3|chr23 (31182818-31182585) | |
| 497-719, gnl|dasNov1|scaffold_27589 (5729-5968) | |
| 497-719, gnl|dasNov1|scaffold_86022 (476-284) | |
| 497-719, gnl|echTel1|scaffold_66085 (5043-4821) | |
| 497-719, gnl|echTel1|scaffold_66085 (5003-4811) | |
| 497-719, gnl|fr1|chrUn (277307631-277307397) | |
| 497-719, gnl|fr1|chrUn (277307583-277307390) | |
| 497-719, gnl|galGal2|chr1 (71382486-71382247) | |
| 497-719, gnl|hg17|chr1 (8860594-8860834) | |
| 497-719, gnl|Hg17|chr1 (8860826-8860604) | |
| 497-719, gnl|hg17|chr2 (202313036-202313233) | |
| 497-719, gnl|loxAfr1|scaffold_33800 (11762-11962) | |
| 497-719, gnl|loxAfr1|scaffold_6718 (73739-73979) | |
| 497-719, gnl|mm7|chr1 (59350613-59350785) | |
| 497-719, gnl|mm7|chr4 (149234891-149234652) | |
| 497-719, gnl|Mm7|chr4 (149234657-149234879) | |
| 497-719, gnl|monDom2|scaffold_148 (817276-817047) | |
| 497-719, gnl|monDom2|scaffold_8 (12949068-12949267) | |
| 497-719, gnl|oryCun1|scaffold_184064 (14445-14205) | |
| 497-719, gnl|oryCun1|scaffold_199389 (110115-110317) | |
| 497-719, gnl|panTro1|chr1 (8867708-8867948) | |
| 497-719, gnl|panTro1|chr13 (92299076-92299273) | |
| 497-719, gnl|rheMac2|chr1 (11905258-11905498) | |
| 497-719, gnl|rheMac2|chr12 (65419357-65419554) | |
| 497-719, gnl|rn3|chr5 (167412660-167412421) | |
| 497-719, gnl|rn3|chr9 (57809555-57809731) | |
| 497-719, gnl|tetNig1|chrUn_random (46515987-46515753) | |
| 497-719, gnl|tetNig1|chrUn_random (46515939-46515747) | |
| 497-719, gnl|xenTro1|scaffold_464 (885499-885731) | |
| 917-1122, gnl|bosTau2|chr16 (31514399-31514194) | |
| 917-1122, gnl|Hg17|chr1 (8858418-8858213) | |
| 917-1122, gnl|Mm7|chr4 (149236992-149237197) | |
| 1286-1438, gnl|bosTau2|chr19 (14846558-14846712) | |
| 1286-1438, gnl|Hg17|chr17 (4800995-4801148) | |
| 1286-1438, gnl|Mm7|chr11 (70743935-70744085) |
| Aligned organism(s): 61 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 143-840, gnl|bosTau2|chr1 (78694262-78693572) | |
| 143-840, gnl|Hg17|chr12 (6895847-6899123) | |
| 143-840, gnl|Mm7|chr6 (124793961-124789962) | |
| 363-495, gnl|bosTau2|chr16 (31517158-31517026) | |
| 363-495, gnl|canFam2|chr5 (65304522-65304674) | |
| 363-495, gnl|danRer3|chr23 (31180052-31179906) | |
| 363-495, gnl|dasNov1|scaffold_27589 (7000-7155) | |
| 363-495, gnl|echTel1|scaffold_66085 (4819-4689) | |
| 363-495, gnl|fr1|chrUn (277307331-277307179) | |
| 363-495, gnl|galGal2|chr21 (3070612-3070766) | |
| 363-495, gnl|hg17|chr1 (8861436-8861591) | |
| 363-495, gnl|Hg17|chr1 (8861575-8861443) | |
| 363-495, gnl|loxAfr1|scaffold_6718 (74436-74591) | |
| 363-495, gnl|mm7|chr4 (149233924-149233769) | |
| 363-495, gnl|Mm7|chr4 (149233783-149233915) | |
| 363-495, gnl|monDom2|scaffold_148 (816658-816503) | |
| 363-495, gnl|oryCun1|scaffold_184064 (13861-13706) | |
| 363-495, gnl|panTro1|chr1 (8868550-8868705) | |
| 363-495, gnl|rheMac2|chr1 (11906095-11906250) | |
| 363-495, gnl|rn3|chr5 (167411963-167411808) | |
| 363-495, gnl|tetNig1|chrUn_random (46515680-46515531) | |
| 363-495, gnl|xenTro1|scaffold_464 (885883-886039) | |
| 497-719, gnl|bosTau2|chr16 (31516642-31516420) | |
| 497-719, gnl|canFam2|chr1 (81475348-81475551) | |
| 497-719, gnl|canFam2|chrX (12244301-12244521) | |
| 497-719, gnl|danRer3|chr22 (35428761-35428570) | |
| 497-719, gnl|danRer3|chr23 (31182818-31182585) | |
| 497-719, gnl|dasNov1|scaffold_27589 (5729-5968) | |
| 497-719, gnl|dasNov1|scaffold_86022 (476-284) | |
| 497-719, gnl|echTel1|scaffold_66085 (5043-4821) | |
| 497-719, gnl|echTel1|scaffold_66085 (5003-4811) | |
| 497-719, gnl|fr1|chrUn (277307631-277307397) | |
| 497-719, gnl|fr1|chrUn (277307583-277307390) | |
| 497-719, gnl|galGal2|chr1 (71382486-71382247) | |
| 497-719, gnl|hg17|chr1 (8860594-8860834) | |
| 497-719, gnl|Hg17|chr1 (8860826-8860604) | |
| 497-719, gnl|hg17|chr2 (202313036-202313233) | |
| 497-719, gnl|loxAfr1|scaffold_33800 (11762-11962) | |
| 497-719, gnl|loxAfr1|scaffold_6718 (73739-73979) | |
| 497-719, gnl|mm7|chr1 (59350613-59350785) | |
| 497-719, gnl|mm7|chr4 (149234891-149234652) | |
| 497-719, gnl|Mm7|chr4 (149234657-149234879) | |
| 497-719, gnl|monDom2|scaffold_148 (817276-817047) | |
| 497-719, gnl|monDom2|scaffold_8 (12949068-12949267) | |
| 497-719, gnl|oryCun1|scaffold_184064 (14445-14205) | |
| 497-719, gnl|oryCun1|scaffold_199389 (110115-110317) | |
| 497-719, gnl|panTro1|chr1 (8867708-8867948) | |
| 497-719, gnl|panTro1|chr13 (92299076-92299273) | |
| 497-719, gnl|rheMac2|chr1 (11905258-11905498) | |
| 497-719, gnl|rheMac2|chr12 (65419357-65419554) | |
| 497-719, gnl|rn3|chr5 (167412660-167412421) | |
| 497-719, gnl|rn3|chr9 (57809555-57809731) | |
| 497-719, gnl|tetNig1|chrUn_random (46515987-46515753) | |
| 497-719, gnl|tetNig1|chrUn_random (46515939-46515747) | |
| 497-719, gnl|xenTro1|scaffold_464 (885499-885731) | |
| 917-1122, gnl|bosTau2|chr16 (31514399-31514194) | |
| 917-1122, gnl|Hg17|chr1 (8858418-8858213) | |
| 917-1122, gnl|Mm7|chr4 (149236992-149237197) | |
| 1286-1438, gnl|bosTau2|chr19 (14846558-14846712) | |
| 1286-1438, gnl|Hg17|chr17 (4800995-4801148) | |
| 1286-1438, gnl|Mm7|chr11 (70743935-70744085) |
| Expressed library(ies): 23 entry(ies) | More info |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
| mas (7.15037) | |
| nms (4.49102) | |
| nep (1.83925) | |
| ton (1.755) | |
| hlv (1.39256) | |
| ste (0.811249) | |
| ldo (0.679018) | |
| ctl (0.612276) | |
| sme (0.610874) | |
| jca (0.569801) | |
| ssp (0.542079) | |
| cty (0.41632) | |
| hea (0.408998) | |
| col (0.390016) | |
| elu (0.385356) | |
| nca (0.273748) | |
| che (0.272628) | |
| fce (0.271592) | |
| ese (0.253004) | |
| eru (0.240096) | |
| pty (0.142714) | |
| eep (0.122564) | |
| clu (0.119646) |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (7.15037) | |
| nms (4.49102) | |
| nep (1.83925) | |
| ton (1.755) | |
| hlv (1.39256) | |
| ste (0.811249) | |
| ldo (0.679018) | |
| ctl (0.612276) | |
| sme (0.610874) | |
| jca (0.569801) | |
| ssp (0.542079) | |
| cty (0.41632) | |
| hea (0.408998) | |
| col (0.390016) | |
| elu (0.385356) | |
| nca (0.273748) | |
| che (0.272628) | |
| fce (0.271592) | |
| ese (0.253004) | |
| eru (0.240096) | |
| pty (0.142714) | |
| eep (0.122564) | |
| clu (0.119646) |