Non-Coding RNA Search

Ss1.1-unkn-10A12C.5

Sequence:


               
               GCCAACAAAAAATATTCTAACATTTGGTAGAAATACTTGAAGAGCTCAGGTACTCAGAAA
TCAAGTTACACCATTGGCAGAGGTGGGAGGAGGGAGATGGGCAGCAAGGAAGTGCAGGTA
CATAAGGAAGATAACCTCAATATGCACTGGTGACAGTCGACTTTTCCTTCCATCAGGGCT
TCCTTGCAGAGCAGAGAAGCGGAATGCTGCTGCATCCTTCCCACACCCTGTTTGAGCAGG
CTGCACTGGGGTACTAACCATCTGGGCCACCAGGACTAGCAGAGGATTCTGGAGAATTTG
TTGTTTTAAAGCAGCTGAGTGCAAGATGTGAAAATAGGAATCTAGAGCAGAAAATGTAGC
AAGCTGTGGTTCTTGGACTGGATGGTGGGCAGAATTTATTTATAAGAAGATTCAAGTCTT
TACCAAATCTTACAGGACAGTTCCATCAAAACCTGTCATTTAAAACGTCACCACATGTGT
AGTAATCCTGAAGGATACAGGTAGGATTTCTGGACCTTGACTGCTAGTGACTTCCAAAAT
TTACAATTAGAAACGCAGATTTATCGGGCAGTCGGTAATCTAGACCCTCTAGGGGCTGTA
AAAGGTGAGAGGCGATAGCAGATAAGTCTTAGAGCACAGTCTTTCAGAATGAAATCTACA
GAGAAAAATGGTTCAAGGGTATAGGAGTTAGAGGACCTTTCTTTTAACTTTAAAAAGTTA
AGCAAACTATAGAAGACCTGGGGGCGGGGGTGGAATACAAAATTAGAATAATTTTTTACA
GAATGGTGTTTCTTTTCGTATGTACCATAAGGTCTTCATTAGCTGACTCGGGGAAGAGGC
ATGCCGGGATGTTGTTTCCTGGGAAGACACATGACTACGATTTTGTTTACCAGAAGTTTG
TTTTATGTACAGCCTTGAATGATGCATCTGTGGCTTAAAGCAAGGTAGATGTTTGTACTT
CGCTATCAGAGGCAGTGACATCAGTTTTTTTCTAGATTCCTTTGGTCAAAGATTACCTGA
TGCTGATCAGACTTCTTTTCTTTCCCAGAAGGCACCACAGCTTTGATTTCATCCCACCCA
TCAGAGGCCTTTCCCTCTGAATGATTCTGTTTCCATTCTCTATTCTGATCATCCTTTTGA
AGTAGTTCTGGTGATATACTCAGATTAATTCAACATAACTGACTGCATTTGCATTTTAAC
TGTGCCTATAATGAATATTGATTTGCTCATTTTTATTCAAAATCTCATCTCCATGGCAAG
TTGGGGTAATGGCCTTTGCACTCAAGTAAGGTTTGTTTACCAGTTTTGTAGCCATATTTG
GCAAATCTTAGCAAATAGAAACCCCTCTTTCCCCCCTTATTTGTTCTTGCAATTGTTCTT
TTATTGCTTTCCTGGTTTTTCTTTAAGCTTTGAGACTACTGCATCTTAAAAGAACTAGGC
TAATTGGCAAAATAGGCTTGCCAATAGCTCATTCACTCCCATAATGCTTTGGTTTTGAGA
GTTGGGAAAACTCTGAGAACTTAAGGGAACCAAACTCAGGAATCCCACAGTTGGTTGCAT
TGTGCCATTGCTTTAGGGGCTGGACATAGGACCTGTCTGCAGCTGAGTGAACTAGATGCT
TTTGGGTTTGAGTTTTTGTCACATACTGAAATGTAAGTCAGCCCTAAGTAATCAGAACAC
TTTATTTTATTTTTCTTTTTTAATAGGAACTTTCTGAAGAAAAAGTGATGTGTAAAACAT
TTGATATTTAAGACAATAAAGTTTTTATCATAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCAACAAAAAATATTCTAACATTTGGTAGAAATACTTGAAGAGCTCAGGTACTCAGAAA
TCAAGTTACACCATTGGCAGAGGTGGGAGGAGGGAGATGGGCAGCAAGGAAGTGCAGGTA
CATAAGGAAGATAACCTCAATATGCACTGGTGACAGTCGACTTTTCCTTCCATCAGGGCT
TCCTTGCAGAGCAGAGAAGCGGAATGCTGCTGCATCCTTCCCACACCCTGTTTGAGCAGG
CTGCACTGGGGTACTAACCATCTGGGCCACCAGGACTAGCAGAGGATTCTGGAGAATTTG
TTGTTTTAAAGCAGCTGAGTGCAAGATGTGAAAATAGGAATCTAGAGCAGAAAATGTAGC
AAGCTGTGGTTCTTGGACTGGATGGTGGGCAGAATTTATTTATAAGAAGATTCAAGTCTT
TACCAAATCTTACAGGACAGTTCCATCAAAACCTGTCATTTAAAACGTCACCACATGTGT
AGTAATCCTGAAGGATACAGGTAGGATTTCTGGACCTTGACTGCTAGTGACTTCCAAAAT
TTACAATTAGAAACGCAGATTTATCGGGCAGTCGGTAATCTAGACCCTCTAGGGGCTGTA
AAAGGTGAGAGGCGATAGCAGATAAGTCTTAGAGCACAGTCTTTCAGAATGAAATCTACA
GAGAAAAATGGTTCAAGGGTATAGGAGTTAGAGGACCTTTCTTTTAACTTTAAAAAGTTA
AGCAAACTATAGAAGACCTGGGGGCGGGGGTGGAATACAAAATTAGAATAATTTTTTACA
GAATGGTGTTTCTTTTCGTATGTACCATAAGGTCTTCATTAGCTGACTCGGGGAAGAGGC
ATGCCGGGATGTTGTTTCCTGGGAAGACACATGACTACGATTTTGTTTACCAGAAGTTTG
TTTTATGTACAGCCTTGAATGATGCATCTGTGGCTTAAAGCAAGGTAGATGTTTGTACTT
CGCTATCAGAGGCAGTGACATCAGTTTTTTTCTAGATTCCTTTGGTCAAAGATTACCTGA
TGCTGATCAGACTTCTTTTCTTTCCCAGAAGGCACCACAGCTTTGATTTCATCCCACCCA
TCAGAGGCCTTTCCCTCTGAATGATTCTGTTTCCATTCTCTATTCTGATCATCCTTTTGA
AGTAGTTCTGGTGATATACTCAGATTAATTCAACATAACTGACTGCATTTGCATTTTAAC
TGTGCCTATAATGAATATTGATTTGCTCATTTTTATTCAAAATCTCATCTCCATGGCAAG
TTGGGGTAATGGCCTTTGCACTCAAGTAAGGTTTGTTTACCAGTTTTGTAGCCATATTTG
GCAAATCTTAGCAAATAGAAACCCCTCTTTCCCCCCTTATTTGTTCTTGCAATTGTTCTT
TTATTGCTTTCCTGGTTTTTCTTTAAGCTTTGAGACTACTGCATCTTAAAAGAACTAGGC
TAATTGGCAAAATAGGCTTGCCAATAGCTCATTCACTCCCATAATGCTTTGGTTTTGAGA
GTTGGGAAAACTCTGAGAACTTAAGGGAACCAAACTCAGGAATCCCACAGTTGGTTGCAT
TGTGCCATTGCTTTAGGGGCTGGACATAGGACCTGTCTGCAGCTGAGTGAACTAGATGCT
TTTGGGTTTGAGTTTTTGTCACATACTGAAATGTAAGTCAGCCCTAAGTAATCAGAACAC
TTTATTTTATTTTTCTTTTTTAATAGGAACTTTCTGAAGAAAAAGTGATGTGTAAAACAT
TTGATATTTAAGACAATAAAGTTTTTATCATAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1383-1539, + strand, RNAz p=0.974241

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1383-1539, + strand, RNAz p=0.974241

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               2-966, gnl|bosTau2|chr16 (38917744-38918680)
               

               
               2-966, gnl|Hg17|chr1 (15739046-15740216)
               


               
               1154-1773, gnl|bosTau2|chr16 (38918679-38919287)
               

               
               1154-1773, gnl|Hg17|chr1 (15740215-15740843)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-966, gnl|bosTau2|chr16 (38917744-38918680)
               

               
               2-966, gnl|Hg17|chr1 (15739046-15740216)
               


               
               1154-1773, gnl|bosTau2|chr16 (38918679-38919287)
               

               
               1154-1773, gnl|Hg17|chr1 (15740215-15740843)

Expressed library(ies): 18 entry(ies)

More info

Expressed library(ies): 18 entry(ies)

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               csk (0.562984)
               

               
               lun (0.451467)
               

               
               isp (0.300752)
               

               
               spl (0.286369)
               

               
               cbl (0.229595)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.562984)
               

               
               lun (0.451467)
               

               
               isp (0.300752)
               

               
               spl (0.286369)
               

               
               cbl (0.229595)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	2-966, gnl\|bosTau2\|chr16 (38917744-38918680)
	2-966, gnl\|Hg17\|chr1 (15739046-15740216)

	1154-1773, gnl\|bosTau2\|chr16 (38918679-38919287)
	1154-1773, gnl\|Hg17\|chr1 (15740215-15740843)

	csk (0.562984)
	lun (0.451467)
	isp (0.300752)
	spl (0.286369)
	cbl (0.229595)
	fcc (0.197785)
	cmu (0.186393)
	sin (0.174948)
	duo (0.172801)
	liv (0.146284)
	pty (0.142714)
	kid (0.129735)
	ret (0.128733)
	sug (0.127291)
	bla (0.124347)
	tra (0.123092)
	nbm (0.0993246)
	ldo (0.0970026)