Non-Coding RNA Search

Ss1.1-unkn-10E01.5

Sequence:


               
               AAACACAGCAGGTGGGGGATTTCCAGTGCAGCTGCTTATATAAACTGGATGCCATGTCCT
TTTCCCCATCTCCTGATTCTGCTTCCTTGACTGCAGAGATGGCTGCTGGCGTCTGTGTGA
TGGTCTCTTCTCATCAGTGGGAATCAATGACCTTCATGGCCTACTTGGAAGATAGAGTGA
AGAAGATCAATGAACACATTCGGTCTAAGACCAAGGTTCCTGTGCCGGACCAGGTTCTCC
AGCTGGGCTCGAAGACCCTAAAGCCCCACAGAACCCTGTCATCTTACGGCATTGACAAGG
AGACCACCATCCACCTCACCCTGAAGGTGGTGAAGCCCAGTGATGAGGATCTGACCTTGG
TTTTGGTGGAGTCAGGTGATGAGGGGCAGAGACACCAGCTCCAGGTTCGAAGGTCCAGCC
CAGTGACCCAGGTGAAAAAGATGATCCAGATGAAGACCGCTATAATCCCCAAGGAGCAGA
TCGTGACTTGCAATGGAAAGAAGCTGGAAGATGGGAAGATCATGGCTGATTATGGCATCA
GAAATGGCCATTTACTCTTCCTGGCATTCAGCTGCATTGGGGGGTAATCGCCTGGGGACA
GAATACCTTATTTCCTTTTACTTCTCACTTACTAACCACACCCTTTGAAAATTTCCTAAA
GTCAATGATAAAGATAAAAAGAAAGAGAAGATTTGGGATGGACTGGGGAGGAAGACAGTA
GAATATTTCTAACTCTTTGATTCTTTGATTCTAACATGACTAAGTAGCAAAACTGCATAT
ACTATATATACTGATATATTATTACTGGAAGGTCCATTAGAAATAACCTTCAAAGCCAGC
TTGCCATTTAATTCTTTCATGGTTCCCTCTGATTCATAGAAAAACTATTTCCTTTTCCAA
CAAACAAGACAGTGAGTTTTAGGTCAGCATCTGTGTTCTTCTGATGACTGTGTCTGCATC
TGTTTAGTCCACTGCTGCGTCTATCATATCATTCAATAATCCTTGAACCAAACTGACTTT
CTACCTATAGAGAATAGTGAAATGATGTGTTATGAAGTGAATGATTTACGCTGACATGAT
TACAATCTTATTAATAAATAATTTAGAAATTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACACAGCAGGTGGGGGATTTCCAGTGCAGCTGCTTATATAAACTGGATGCCATGTCCT
TTTCCCCATCTCCTGATTCTGCTTCCTTGACTGCAGAGATGGCTGCTGGCGTCTGTGTGA
TGGTCTCTTCTCATCAGTGGGAATCAATGACCTTCATGGCCTACTTGGAAGATAGAGTGA
AGAAGATCAATGAACACATTCGGTCTAAGACCAAGGTTCCTGTGCCGGACCAGGTTCTCC
AGCTGGGCTCGAAGACCCTAAAGCCCCACAGAACCCTGTCATCTTACGGCATTGACAAGG
AGACCACCATCCACCTCACCCTGAAGGTGGTGAAGCCCAGTGATGAGGATCTGACCTTGG
TTTTGGTGGAGTCAGGTGATGAGGGGCAGAGACACCAGCTCCAGGTTCGAAGGTCCAGCC
CAGTGACCCAGGTGAAAAAGATGATCCAGATGAAGACCGCTATAATCCCCAAGGAGCAGA
TCGTGACTTGCAATGGAAAGAAGCTGGAAGATGGGAAGATCATGGCTGATTATGGCATCA
GAAATGGCCATTTACTCTTCCTGGCATTCAGCTGCATTGGGGGGTAATCGCCTGGGGACA
GAATACCTTATTTCCTTTTACTTCTCACTTACTAACCACACCCTTTGAAAATTTCCTAAA
GTCAATGATAAAGATAAAAAGAAAGAGAAGATTTGGGATGGACTGGGGAGGAAGACAGTA
GAATATTTCTAACTCTTTGATTCTTTGATTCTAACATGACTAAGTAGCAAAACTGCATAT
ACTATATATACTGATATATTATTACTGGAAGGTCCATTAGAAATAACCTTCAAAGCCAGC
TTGCCATTTAATTCTTTCATGGTTCCCTCTGATTCATAGAAAAACTATTTCCTTTTCCAA
CAAACAAGACAGTGAGTTTTAGGTCAGCATCTGTGTTCTTCTGATGACTGTGTCTGCATC
TGTTTAGTCCACTGCTGCGTCTATCATATCATTCAATAATCCTTGAACCAAACTGACTTT
CTACCTATAGAGAATAGTGAAATGATGTGTTATGAAGTGAATGATTTACGCTGACATGAT
TACAATCTTATTAATAAATAATTTAGAAATTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61809015|ref|XP_590550.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61809015|ref|XP_590550.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               117-585, gnl|bosTau2|chr23 (24125110-24124642)
               

               
               117-585, gnl|Hg17|chr6 (29632106-29631638)
               

               
               117-585, gnl|Mm7|chr17 (35347632-35348097)
               


               
               602-1121, gnl|bosTau2|chr23 (24095594-24095059)
               

               
               602-1121, gnl|Hg17|chr6 (29631603-29631085)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               117-585, gnl|bosTau2|chr23 (24125110-24124642)
               

               
               117-585, gnl|Hg17|chr6 (29632106-29631638)
               

               
               117-585, gnl|Mm7|chr17 (35347632-35348097)
               


               
               602-1121, gnl|bosTau2|chr23 (24095594-24095059)
               

               
               602-1121, gnl|Hg17|chr6 (29631603-29631085)

Expressed library(ies): 27 entry(ies)

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Expressed library(ies): 27 entry(ies)

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               sin (5.94822)
               

               
               rec (3.98062)
               

               
               ill (3.68745)
               

               
               duo (3.11042)
               

               
               cje (2.97422)
               

               
               jej (1.78059)
               

               
               lin (1.60163)
               

               
               spl (0.572738)
               

               
               sto (0.539471)
               

               
               mga (0.480615)
               

               
               sme (0.305437)
               

               
               cte (0.29274)
               

               
               lnt (0.284616)
               

               
               thg (0.253582)
               

               
               pan (0.23596)
               

               
               csp (0.161186)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               med (0.116252)
               

               
               cty (0.10408)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (5.94822)
               

               
               rec (3.98062)
               

               
               ill (3.68745)
               

               
               duo (3.11042)
               

               
               cje (2.97422)
               

               
               jej (1.78059)
               

               
               lin (1.60163)
               

               
               spl (0.572738)
               

               
               sto (0.539471)
               

               
               mga (0.480615)
               

               
               sme (0.305437)
               

               
               cte (0.29274)
               

               
               lnt (0.284616)
               

               
               thg (0.253582)
               

               
               pan (0.23596)
               

               
               csp (0.161186)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               med (0.116252)
               

               
               cty (0.10408)

	117-585, gnl\|bosTau2\|chr23 (24125110-24124642)
	117-585, gnl\|Hg17\|chr6 (29632106-29631638)
	117-585, gnl\|Mm7\|chr17 (35347632-35348097)

	602-1121, gnl\|bosTau2\|chr23 (24095594-24095059)
	602-1121, gnl\|Hg17\|chr6 (29631603-29631085)

	sin (5.94822)
	rec (3.98062)
	ill (3.68745)
	duo (3.11042)
	cje (2.97422)
	jej (1.78059)
	lin (1.60163)
	spl (0.572738)
	sto (0.539471)
	mga (0.480615)
	sme (0.305437)
	cte (0.29274)
	lnt (0.284616)
	thg (0.253582)
	pan (0.23596)
	csp (0.161186)
	tbr (0.154178)
	cag (0.151194)
	lun (0.150489)
	fat (0.147427)
	liv (0.146284)
	csk (0.140746)
	hlv (0.139256)
	ste (0.135208)
	ova (0.129132)
	med (0.116252)
	cty (0.10408)