Ss1.1-unkn-13F02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTGTGATGGGTTATCCAAATGCTATTGATAAGCCTAATCCTGGAATTGAGAATTTCTTA GCATCCTTGAATATCGCCAAAGAAAATGAAGTACAGTTATCTCATCATGAAGAGCCTCCA AGTGAAGAGCATCTGTCACCACAGTCATTTGCTATGAAGGGCACTCGGATGCTTAAAGAA ATACTAAAAATTGATGGCTCTGGCACTCTGGACCATAAGAGTGAAATGAAACAGTTTGGT AATGAAGTCACTGTTTCCTCTAATAGAAGAGATGAATATGGATCTTCCTCACAGCCTAAA CAAAATAAGAAATTAACATCTTATACGAACAAGCCTCACAGTGCCAGTGAGTACCATAAT GTTCAGTCTTTGGACAGTATGTGCTGGCCTGCTCTCAGCCAGATTCCTCCTGTGTCCACA CCAGTAACTGAACTTTCTCGAATTTGTTCCCTTGTTGGAATGCCACAACCAGATTTCTCC TTTCTAAGAACACCACAGACAATGACAGTTTGCCAGGTAAAATTATCTAATGGCTTACTG GTACATGGGCCACAGTGCCATTCTGAAAATGAGGCCAAGGAAAAAGCTGCACTTTTTGCT TTACAACAATTGGGCTCCTTAGGAGTGAATTTCCCTTTGCCTCCACCAATATTTCCAAGT TATCCTCCTGCTGTACCACCTGGAACAATTCCTCCAGTTTTTCCCCAACCTACTGGCTGG GATCACTATGGAAGCAACTTAGCATTGGGGGCAGCTAATATAATGCCATCATCAACTCAT CTCTTTGGCTCGATGCCGTGGGGACCACCAGTGCCAGTTCCTGGGAAGCCCTTCCATCAT ACTTCATATGCCGGGACCATGCCCATGGCTGGAGGAATGCCAGCTGGTGTGCATAATCAG TTCATACCTTTACAGGTAACTAAAAAAAGAGTTGCAAACAAAAAGAACTTTGAGAACAAG GAGACTCAGAGTTCTCATGCCACACCACTTCAAACTAGCCAGTCAGCGTCTTCTGATGTC ACCAAAGCAGTTCCACAGGAGAGTTCATCAGCTTCGTTAAAGTCCTCTCAGAATATCCAG CCTGCATCTTCTCTTCAAGCTGAAGCTGCCTCCCCAGGCCATAGTATGTCTCACCATAAA TCAACACCAAGCTCTTCTTCAAGAAGAAAATCAAGAAAACTGGCTGTCAATTTTGGCATT TCTAAACCTTCTGAATAAATTTGGTACTTGGAATTAAATCAACTTCTTTCCTTTCCTCCC ACCTTTTTATAAATCCATATCTGTGTCTCATAAAAATTACAACGTACTATTTTAAAACAA TATGTTTCAATTAAAATTTTTAAAATTTTAGTTGTCAGGCACTTTTCATGCTGTTTAAAA ACTATCCATCAAATTGTACATCTTAAGTATGTGCAGTTTGTTTTACATCAATTATACCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTGTGATGGGTTATCCAAATGCTATTGATAAGCCTAATCCTGGAATTGAGAATTTCTTA GCATCCTTGAATATCGCCAAAGAAAATGAAGTACAGTTATCTCATCATGAAGAGCCTCCA AGTGAAGAGCATCTGTCACCACAGTCATTTGCTATGAAGGGCACTCGGATGCTTAAAGAA ATACTAAAAATTGATGGCTCTGGCACTCTGGACCATAAGAGTGAAATGAAACAGTTTGGT AATGAAGTCACTGTTTCCTCTAATAGAAGAGATGAATATGGATCTTCCTCACAGCCTAAA CAAAATAAGAAATTAACATCTTATACGAACAAGCCTCACAGTGCCAGTGAGTACCATAAT GTTCAGTCTTTGGACAGTATGTGCTGGCCTGCTCTCAGCCAGATTCCTCCTGTGTCCACA CCAGTAACTGAACTTTCTCGAATTTGTTCCCTTGTTGGAATGCCACAACCAGATTTCTCC TTTCTAAGAACACCACAGACAATGACAGTTTGCCAGGTAAAATTATCTAATGGCTTACTG GTACATGGGCCACAGTGCCATTCTGAAAATGAGGCCAAGGAAAAAGCTGCACTTTTTGCT TTACAACAATTGGGCTCCTTAGGAGTGAATTTCCCTTTGCCTCCACCAATATTTCCAAGT TATCCTCCTGCTGTACCACCTGGAACAATTCCTCCAGTTTTTCCCCAACCTACTGGCTGG GATCACTATGGAAGCAACTTAGCATTGGGGGCAGCTAATATAATGCCATCATCAACTCAT CTCTTTGGCTCGATGCCGTGGGGACCACCAGTGCCAGTTCCTGGGAAGCCCTTCCATCAT ACTTCATATGCCGGGACCATGCCCATGGCTGGAGGAATGCCAGCTGGTGTGCATAATCAG TTCATACCTTTACAGGTAACTAAAAAAAGAGTTGCAAACAAAAAGAACTTTGAGAACAAG GAGACTCAGAGTTCTCATGCCACACCACTTCAAACTAGCCAGTCAGCGTCTTCTGATGTC ACCAAAGCAGTTCCACAGGAGAGTTCATCAGCTTCGTTAAAGTCCTCTCAGAATATCCAG CCTGCATCTTCTCTTCAAGCTGAAGCTGCCTCCCCAGGCCATAGTATGTCTCACCATAAA TCAACACCAAGCTCTTCTTCAAGAAGAAAATCAAGAAAACTGGCTGTCAATTTTGGCATT TCTAAACCTTCTGAATAAATTTGGTACTTGGAATTAAATCAACTTCTTTCCTTTCCTCCC ACCTTTTTATAAATCCATATCTGTGTCTCATAAAAATTACAACGTACTATTTTAAAACAA TATGTTTCAATTAAAATTTTTAAAATTTTAGTTGTCAGGCACTTTTCATGCTGTTTAAAA ACTATCCATCAAATTGTACATCTTAAGTATGTGCAGTTTGTTTTACATCAATTATACCTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1326-1440, + strand, RNAz p=0.717088 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1326-1440, + strand, RNAz p=0.717088 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 32-156, gnl|bosTau2|chr1 (79035972-79036096) | |
| 32-156, gnl|canFam2|chr23 (41098840-41098978) | |
| 32-156, gnl|danRer3|chr11 (8653576-8653427) | |
| 32-156, gnl|dasNov1|scaffold_106535 (4-112) | |
| 32-156, gnl|echTel1|scaffold_40309 (798-936) | |
| 32-156, gnl|fr1|chrUn (212328180-212328038) | |
| 32-156, gnl|galGal2|chr9 (3233183-3233042) | |
| 32-156, gnl|hg17|chr3 (143534501-143534639) | |
| 32-156, gnl|Hg17|chr3 (143534631-143534507) | |
| 32-156, gnl|mm7|chr9 (95684838-95684700) | |
| 32-156, gnl|Mm7|chr9 (95684706-95684830) | |
| 32-156, gnl|monDom2|scaffold_28 (12845335-12845476) | |
| 32-156, gnl|oryCun1|scaffold_131903 (4049-4187) | |
| 32-156, gnl|panTro1|chr2 (146108055-146108194) | |
| 32-156, gnl|rheMac2|chr2 (145528877-145528739) | |
| 32-156, gnl|rn3|chr8 (101129429-101129294) | |
| 314-498, gnl|bosTau2|chr1 (79038678-79038859) | |
| 314-498, gnl|Hg17|chr3 (143531158-143530974) | |
| 314-498, gnl|Mm7|chr9 (95691312-95691490) | |
| 602-716, gnl|bosTau2|chr1 (79050304-79050418) | |
| 602-716, gnl|Hg17|chr3 (143520245-143520131) | |
| 602-716, gnl|Mm7|chr9 (95694159-95694273) | |
| 901-1440, gnl|bosTau2|chr1 (79058489-79059021) | |
| 901-1440, gnl|Hg17|chr3 (143513367-143512826) | |
| 901-1440, gnl|Mm7|chr9 (95698328-95698845) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 32-156, gnl|bosTau2|chr1 (79035972-79036096) | |
| 32-156, gnl|canFam2|chr23 (41098840-41098978) | |
| 32-156, gnl|danRer3|chr11 (8653576-8653427) | |
| 32-156, gnl|dasNov1|scaffold_106535 (4-112) | |
| 32-156, gnl|echTel1|scaffold_40309 (798-936) | |
| 32-156, gnl|fr1|chrUn (212328180-212328038) | |
| 32-156, gnl|galGal2|chr9 (3233183-3233042) | |
| 32-156, gnl|hg17|chr3 (143534501-143534639) | |
| 32-156, gnl|Hg17|chr3 (143534631-143534507) | |
| 32-156, gnl|mm7|chr9 (95684838-95684700) | |
| 32-156, gnl|Mm7|chr9 (95684706-95684830) | |
| 32-156, gnl|monDom2|scaffold_28 (12845335-12845476) | |
| 32-156, gnl|oryCun1|scaffold_131903 (4049-4187) | |
| 32-156, gnl|panTro1|chr2 (146108055-146108194) | |
| 32-156, gnl|rheMac2|chr2 (145528877-145528739) | |
| 32-156, gnl|rn3|chr8 (101129429-101129294) | |
| 314-498, gnl|bosTau2|chr1 (79038678-79038859) | |
| 314-498, gnl|Hg17|chr3 (143531158-143530974) | |
| 314-498, gnl|Mm7|chr9 (95691312-95691490) | |
| 602-716, gnl|bosTau2|chr1 (79050304-79050418) | |
| 602-716, gnl|Hg17|chr3 (143520245-143520131) | |
| 602-716, gnl|Mm7|chr9 (95694159-95694273) | |
| 901-1440, gnl|bosTau2|chr1 (79058489-79059021) | |
| 901-1440, gnl|Hg17|chr3 (143513367-143512826) | |
| 901-1440, gnl|Mm7|chr9 (95698328-95698845) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.415628) | |
| cbl (0.344392) |