Non-Coding RNA Search

Ss1.1-unkn-28A07.5

Sequence:


               
               GGGGGGCTTGTGCTTGGAGCGGCGGCCTGTGGCCCAGAGCACTGATGGGGTCCGGGGTAA
GAGGGGCTACTCGAGAGGCCTGCACGCCTGGGAGATCAGCTGGCCCCGGGAACAGAGAGG
CACCCACGCCGTGGTGGGCGTGGCCACGGCCCTCGCCCCGCTGCAAGCTGACCACTATGC
GGCGCTGCTGGGCAGCAACAGCGAGTCGTGGGGTTGGGACATTGGGCGGGGGAAGCTGTA
CCATCAGAGCAAGGGGCCCGGGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGGGCTTGTGCTTGGAGCGGCGGCCTGTGGCCCAGAGCACTGATGGGGTCCGGGGTAA
GAGGGGCTACTCGAGAGGCCTGCACGCCTGGGAGATCAGCTGGCCCCGGGAACAGAGAGG
CACCCACGCCGTGGTGGGCGTGGCCACGGCCCTCGCCCCGCTGCAAGCTGACCACTATGC
GGCGCTGCTGGGCAGCAACAGCGAGTCGTGGGGTTGGGACATTGGGCGGGGGAAGCTGTA
CCATCAGAGCAAGGGGCCCGGGGC

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

Help | Less info


               
               2-264, gnl|bosTau2|chr5 (60389877-60390139)
               

               
               2-264, gnl|canFam2|chr27 (41181370-41181121)
               

               
               2-264, gnl|danRer3|chr2 (31276774-31277035)
               

               
               2-264, gnl|dasNov1|scaffold_103109 (3023-3272)
               

               
               2-264, gnl|echTel1|scaffold_319441 (38908-38658)
               

               
               2-264, gnl|fr1|chrUn (306455001-306455265)
               

               
               2-264, gnl|galGal2|chr21 (3194071-3193819)
               

               
               2-264, gnl|hg17|chr12 (6851830-6852079)
               

               
               2-264, gnl|Hg17|chr12 (6852143-6851881)
               

               
               2-264, gnl|mm7|chr6 (124836195-124835946)
               

               
               2-264, gnl|Mm7|chr6 (124835880-124836142)
               

               
               2-264, gnl|monDom2|scaffold_24 (37531965-37531713)
               

               
               2-264, gnl|panTro1|chr10 (7388710-7388959)
               

               
               2-264, gnl|rheMac2|chr11 (7053835-7054084)
               

               
               2-264, gnl|rn3|chr4 (161177528-161177279)
               

               
               2-264, gnl|tetNig1|chr16 (7430276-7430024)
               

               
               2-264, gnl|xenTro1|scaffold_177 (60445-60193)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-264, gnl|bosTau2|chr5 (60389877-60390139)
               

               
               2-264, gnl|canFam2|chr27 (41181370-41181121)
               

               
               2-264, gnl|danRer3|chr2 (31276774-31277035)
               

               
               2-264, gnl|dasNov1|scaffold_103109 (3023-3272)
               

               
               2-264, gnl|echTel1|scaffold_319441 (38908-38658)
               

               
               2-264, gnl|fr1|chrUn (306455001-306455265)
               

               
               2-264, gnl|galGal2|chr21 (3194071-3193819)
               

               
               2-264, gnl|hg17|chr12 (6851830-6852079)
               

               
               2-264, gnl|Hg17|chr12 (6852143-6851881)
               

               
               2-264, gnl|mm7|chr6 (124836195-124835946)
               

               
               2-264, gnl|Mm7|chr6 (124835880-124836142)
               

               
               2-264, gnl|monDom2|scaffold_24 (37531965-37531713)
               

               
               2-264, gnl|panTro1|chr10 (7388710-7388959)
               

               
               2-264, gnl|rheMac2|chr11 (7053835-7054084)
               

               
               2-264, gnl|rn3|chr4 (161177528-161177279)
               

               
               2-264, gnl|tetNig1|chr16 (7430276-7430024)
               

               
               2-264, gnl|xenTro1|scaffold_177 (60445-60193)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               eep (0.122564)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	2-264, gnl\|bosTau2\|chr5 (60389877-60390139)
	2-264, gnl\|canFam2\|chr27 (41181370-41181121)
	2-264, gnl\|danRer3\|chr2 (31276774-31277035)
	2-264, gnl\|dasNov1\|scaffold_103109 (3023-3272)
	2-264, gnl\|echTel1\|scaffold_319441 (38908-38658)
	2-264, gnl\|fr1\|chrUn (306455001-306455265)
	2-264, gnl\|galGal2\|chr21 (3194071-3193819)
	2-264, gnl\|hg17\|chr12 (6851830-6852079)
	2-264, gnl\|Hg17\|chr12 (6852143-6851881)
	2-264, gnl\|mm7\|chr6 (124836195-124835946)
	2-264, gnl\|Mm7\|chr6 (124835880-124836142)
	2-264, gnl\|monDom2\|scaffold_24 (37531965-37531713)
	2-264, gnl\|panTro1\|chr10 (7388710-7388959)
	2-264, gnl\|rheMac2\|chr11 (7053835-7054084)
	2-264, gnl\|rn3\|chr4 (161177528-161177279)
	2-264, gnl\|tetNig1\|chr16 (7430276-7430024)
	2-264, gnl\|xenTro1\|scaffold_177 (60445-60193)