Ss1.1-unkn-2A30N6.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTAATGTCTACATTCTTTCTAATAAACTGTTGGAAGACTTCTTGGCTATCCTTTCAAGT GTCTGGTTTACTGTAATTTCATGTATTGCCATTTACTGGAATGAGTTTTTAGTTTTACTT GAGGAAGAATTTGGGAATATTCCTCTGTTTGGAAAAAAAAGAAAGAGGCTTGCTGTAATA TCACAGGAAACCTTTTAAAAGTGGATCTGTAATAGAAGATTGTAGATGCACTTTGCAACA GTTGGAAAAGTGTTGTGATTTGATTGAAATAAAACTAAATGTGTTGTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTAATGTCTACATTCTTTCTAATAAACTGTTGGAAGACTTCTTGGCTATCCTTTCAAGT GTCTGGTTTACTGTAATTTCATGTATTGCCATTTACTGGAATGAGTTTTTAGTTTTACTT GAGGAAGAATTTGGGAATATTCCTCTGTTTGGAAAAAAAAGAAAGAGGCTTGCTGTAATA TCACAGGAAACCTTTTAAAAGTGGATCTGTAATAGAAGATTGTAGATGCACTTTGCAACA GTTGGAAAAGTGTTGTGATTTGATTGAAATAAAACTAAATGTGTTGTC |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 79-288, - strand, RNAz p=0.723835 | |
| 80-252, + strand, RNAz p=0.999796 | |
| 149-277, - strand, RNAz p=0.996171 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 79-288, - strand, RNAz p=0.723835 | |
| 80-252, + strand, RNAz p=0.999796 | |
| 149-277, - strand, RNAz p=0.996171 |
| Similar Transcript(s): 6 entry(ies) | More info |
| Similar Transcript(s): 6 entry(ies) | Help | Less info |
| 166-277, AM019586 KN-252-liver, Bos indicus Bos indicus cDNA clone (emb|AM019586.1|), blast E-value=5e-38, identity=93.1% | |
| 166-277, Hw_loin_24_050701_D01 Bos taurus CF-24-HW loin cDNA library Bos (gb|DV795269.1|), blast E-value=5e-38, identity=93.1% | |
| 166-277, Hw_Loin_13_0520_G09 Bos taurus CF-24-HW loin cDNA library Bos (gb|DV798256.1|), blast E-value=5e-38, identity=93.1% | |
| 166-277, 000403BTYA003608HT BTYA Bos taurus cDNA, mRNA sequence (gb|DY069568.1|), blast E-value=5e-38, identity=93.1% | |
| 166-277, 000406BTYA004044HT BTYA Bos taurus cDNA, mRNA sequence (gb|DY118252.1|), blast E-value=5e-38, identity=93.1% | |
| 161-277, PADT0811026_B04F porcine adipose tissue cDNA library (PADT) Sus (gb|EB421308.1|), blast E-value=0, identity=100% |
| Similar Transcript(s): 6 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
| 166-277, AM019586 KN-252-liver, Bos indicus Bos indicus cDNA clone (emb|AM019586.1|), blast E-value=5e-38, identity=93.1% | |
| 166-277, Hw_loin_24_050701_D01 Bos taurus CF-24-HW loin cDNA library Bos (gb|DV795269.1|), blast E-value=5e-38, identity=93.1% | |
| 166-277, Hw_Loin_13_0520_G09 Bos taurus CF-24-HW loin cDNA library Bos (gb|DV798256.1|), blast E-value=5e-38, identity=93.1% | |
| 166-277, 000403BTYA003608HT BTYA Bos taurus cDNA, mRNA sequence (gb|DY069568.1|), blast E-value=5e-38, identity=93.1% | |
| 166-277, 000406BTYA004044HT BTYA Bos taurus cDNA, mRNA sequence (gb|DY118252.1|), blast E-value=5e-38, identity=93.1% | |
| 161-277, PADT0811026_B04F porcine adipose tissue cDNA library (PADT) Sus (gb|EB421308.1|), blast E-value=0, identity=100% |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_006601, + |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 1-288, gnl|bosTau2|chr5 (33092286-33092570) | |
| 1-288, gnl|canFam2|chr10 (3867909-3868199) | |
| 1-288, gnl|canFam2|chr10 (3868000-3868224) | |
| 1-288, gnl|canFam2|chr10 (3868335-3868000) | |
| 1-288, gnl|dasNov1|scaffold_4517 (13462-13197) | |
| 1-288, gnl|dasNov1|scaffold_4517 (13388-13168) | |
| 1-288, gnl|dasNov1|scaffold_4517 (13065-13388) | |
| 1-288, gnl|echTel1|scaffold_183163 (2771-3025) | |
| 1-288, gnl|echTel1|scaffold_183163 (2848-3051) | |
| 1-288, gnl|echTel1|scaffold_183163 (3160-2848) | |
| 1-288, gnl|hg17|chr12 (55343328-55343593) | |
| 1-288, gnl|Hg17|chr12 (55343689-55343408) | |
| 1-288, gnl|hg17|chr4 (171066523-171066749) | |
| 1-288, gnl|hg17|chr9 (14971396-14971730) | |
| 1-288, gnl|loxAfr1|scaffold_2821 (101214-101488) | |
| 1-288, gnl|loxAfr1|scaffold_2821 (101287-101517) | |
| 1-288, gnl|loxAfr1|scaffold_2821 (101622-101287) | |
| 1-288, gnl|mm7|chr10 (127578688-127578437) | |
| 1-288, gnl|mm7|chr10 (127578645-127578410) | |
| 1-288, gnl|mm7|chr10 (127578307-127578645) | |
| 1-288, gnl|Mm7|chr10 (127578341-127578636) | |
| 1-288, gnl|monDom2|scaffold_277 (42851-43128) | |
| 1-288, gnl|monDom2|scaffold_277 (42925-43154) | |
| 1-288, gnl|monDom2|scaffold_277 (43262-42925) | |
| 1-288, gnl|oryCun1|scaffold_153911 (6675-6948) | |
| 1-288, gnl|oryCun1|scaffold_153911 (6750-6975) | |
| 1-288, gnl|oryCun1|scaffold_153911 (7079-6750) | |
| 1-288, gnl|panTro1|chr10 (56600820-56601085) | |
| 1-288, gnl|panTro1|chr11 (15191386-15191723) | |
| 1-288, gnl|panTro1|chr3 (188719121-188719347) | |
| 1-288, gnl|rheMac2|chr11 (53742915-53743186) | |
| 1-288, gnl|rheMac2|chr15 (61935239-61934899) | |
| 1-288, gnl|rheMac2|chr5 (161864712-161864934) | |
| 1-288, gnl|rn3|chr6 (136273292-136273080) | |
| 1-288, gnl|rn3|chr6 (136272977-136273297) | |
| 1-288, gnl|rn3|chr7 (1369138-1368907) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-288, gnl|bosTau2|chr5 (33092286-33092570) | |
| 1-288, gnl|canFam2|chr10 (3867909-3868199) | |
| 1-288, gnl|canFam2|chr10 (3868000-3868224) | |
| 1-288, gnl|canFam2|chr10 (3868335-3868000) | |
| 1-288, gnl|dasNov1|scaffold_4517 (13462-13197) | |
| 1-288, gnl|dasNov1|scaffold_4517 (13388-13168) | |
| 1-288, gnl|dasNov1|scaffold_4517 (13065-13388) | |
| 1-288, gnl|echTel1|scaffold_183163 (2771-3025) | |
| 1-288, gnl|echTel1|scaffold_183163 (2848-3051) | |
| 1-288, gnl|echTel1|scaffold_183163 (3160-2848) | |
| 1-288, gnl|hg17|chr12 (55343328-55343593) | |
| 1-288, gnl|Hg17|chr12 (55343689-55343408) | |
| 1-288, gnl|hg17|chr4 (171066523-171066749) | |
| 1-288, gnl|hg17|chr9 (14971396-14971730) | |
| 1-288, gnl|loxAfr1|scaffold_2821 (101214-101488) | |
| 1-288, gnl|loxAfr1|scaffold_2821 (101287-101517) | |
| 1-288, gnl|loxAfr1|scaffold_2821 (101622-101287) | |
| 1-288, gnl|mm7|chr10 (127578688-127578437) | |
| 1-288, gnl|mm7|chr10 (127578645-127578410) | |
| 1-288, gnl|mm7|chr10 (127578307-127578645) | |
| 1-288, gnl|Mm7|chr10 (127578341-127578636) | |
| 1-288, gnl|monDom2|scaffold_277 (42851-43128) | |
| 1-288, gnl|monDom2|scaffold_277 (42925-43154) | |
| 1-288, gnl|monDom2|scaffold_277 (43262-42925) | |
| 1-288, gnl|oryCun1|scaffold_153911 (6675-6948) | |
| 1-288, gnl|oryCun1|scaffold_153911 (6750-6975) | |
| 1-288, gnl|oryCun1|scaffold_153911 (7079-6750) | |
| 1-288, gnl|panTro1|chr10 (56600820-56601085) | |
| 1-288, gnl|panTro1|chr11 (15191386-15191723) | |
| 1-288, gnl|panTro1|chr3 (188719121-188719347) | |
| 1-288, gnl|rheMac2|chr11 (53742915-53743186) | |
| 1-288, gnl|rheMac2|chr15 (61935239-61934899) | |
| 1-288, gnl|rheMac2|chr5 (161864712-161864934) | |
| 1-288, gnl|rn3|chr6 (136273292-136273080) | |
| 1-288, gnl|rn3|chr6 (136272977-136273297) | |
| 1-288, gnl|rn3|chr7 (1369138-1368907) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| fce (0.271592) | |
| nca (0.136874) | |
| eru (0.120048) | |
| eje (0.0988338) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.271592) | |
| nca (0.136874) | |
| eru (0.120048) | |
| eje (0.0988338) |