Non-Coding RNA Search

Ss1.1-unkn-56B07.5

Sequence:


               
               AGGAGGAGCCGCGCGCTGCTGGTGCTGCTGGTGCTGCCGCCCCCGCCGCCGTCGCCGCTG
CCGTCAGTAGGGTTGCGCTCGGTTCTTCAGCGCCAAGTTCCTGCGGACCCATCGCCACTT
CTAGACCTTTCCGCGGGCTCGGATCTTGTCGGGTGAATGTCTGATGAATTTTCGTTGGCA
GATGCACTACCTGATCACTCCCCTGCCAAAACCTCTGCTGTGAGCAATACAAAACCTGGC
CAACCTCCTCAAGGCTGGCCAGGTTCCAGCCCTTGGAATAACCCAAGTGCTCCACCTTCT
GTGCCATCTGGACTCCCACCAAGTGCAACACCCTCCACTGTGCCTTTTGGACCAGCACCA
ACAGGAATGTATCCCTCTGTGCCTCCCACTGGACCACCTCCAGGACCCCCAGCACCCTTT
CCTCCTTCTGGACCATCATGCCCCCCACCTGGTGGTCCTTATCCAGCCCCAGCTGTGCCA
GGCCCTGGCCCCACAGGGCCTTATCCTACACCAAATATGCCCTTTCCAGAGCTTCCAAGA
CCATATGGTGCACCCACAGATCCAGCTGCAGCTGGTCCTTTAGGTCCATGGGGATCCATG
TCTTCTGGACCTTGGGCACCAGGAATGGGAGGGCAGTATCCTACCCCTAATATGCCATAT
CCAGCTCCAGGGCCATATCCTGCTCCTCCTCCTCCCCAAGCACCAGGGGCAGCACCTCCT
GTTCCATGGGGCACTGTTCCCCCAGGAGCCTGGGGACCACCAGGGCCATATCCTGCCCCT
GCAGGATCATATCCCTCACCAGGACTCTATCCTGCTCCCAGTAATCCTTTTCAAGTGCCT
TCAGGACCTTCTGGTGCTCCACCGATGCCTGGGGGCCCCCATTCTTACCATTAAGTTAAC
AATGGACGAAGAGATGACGCTTTGCTTTTTGAAGTACATATATATATGCACATGAATGCA
TATATAAAAATTGCTGTTTCACTATTCTTAGAGGGCATTCATGAAAGAACACCTCTTGCA
CCTCTCAGAAGATATCTGCCTCTTGTGCTTGGATGTTTAGTACATCTGATGGATATAATC
AGATAAAAATGTAAAAGTAAATCATTCAAATGTGATTTTTATTCGGTTTTTATGGAAAGT
TAAAGTTAATAAGTATATTGAATAGCTCTTTGATACAGTTGTTTAAAAGAAGTTTTCGAT
TTGTTTAAATTATGAAACTGAACACTTATATAATCACTTTTTCCCGTAAATAAACACACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAGGAGCCGCGCGCTGCTGGTGCTGCTGGTGCTGCCGCCCCCGCCGCCGTCGCCGCTG
CCGTCAGTAGGGTTGCGCTCGGTTCTTCAGCGCCAAGTTCCTGCGGACCCATCGCCACTT
CTAGACCTTTCCGCGGGCTCGGATCTTGTCGGGTGAATGTCTGATGAATTTTCGTTGGCA
GATGCACTACCTGATCACTCCCCTGCCAAAACCTCTGCTGTGAGCAATACAAAACCTGGC
CAACCTCCTCAAGGCTGGCCAGGTTCCAGCCCTTGGAATAACCCAAGTGCTCCACCTTCT
GTGCCATCTGGACTCCCACCAAGTGCAACACCCTCCACTGTGCCTTTTGGACCAGCACCA
ACAGGAATGTATCCCTCTGTGCCTCCCACTGGACCACCTCCAGGACCCCCAGCACCCTTT
CCTCCTTCTGGACCATCATGCCCCCCACCTGGTGGTCCTTATCCAGCCCCAGCTGTGCCA
GGCCCTGGCCCCACAGGGCCTTATCCTACACCAAATATGCCCTTTCCAGAGCTTCCAAGA
CCATATGGTGCACCCACAGATCCAGCTGCAGCTGGTCCTTTAGGTCCATGGGGATCCATG
TCTTCTGGACCTTGGGCACCAGGAATGGGAGGGCAGTATCCTACCCCTAATATGCCATAT
CCAGCTCCAGGGCCATATCCTGCTCCTCCTCCTCCCCAAGCACCAGGGGCAGCACCTCCT
GTTCCATGGGGCACTGTTCCCCCAGGAGCCTGGGGACCACCAGGGCCATATCCTGCCCCT
GCAGGATCATATCCCTCACCAGGACTCTATCCTGCTCCCAGTAATCCTTTTCAAGTGCCT
TCAGGACCTTCTGGTGCTCCACCGATGCCTGGGGGCCCCCATTCTTACCATTAAGTTAAC
AATGGACGAAGAGATGACGCTTTGCTTTTTGAAGTACATATATATATGCACATGAATGCA
TATATAAAAATTGCTGTTTCACTATTCTTAGAGGGCATTCATGAAAGAACACCTCTTGCA
CCTCTCAGAAGATATCTGCCTCTTGTGCTTGGATGTTTAGTACATCTGATGGATATAATC
AGATAAAAATGTAAAAGTAAATCATTCAAATGTGATTTTTATTCGGTTTTTATGGAAAGT
TAAAGTTAATAAGTATATTGAATAGCTCTTTGATACAGTTGTTTAAAAGAAGTTTTCGAT
TTGTTTAAATTATGAAACTGAACACTTATATAATCACTTTTTCCCGTAAATAAACACACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5R623_PONPY

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5R623_PONPY

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               165-882, + strand, RNAz p=0.99651

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               165-882, + strand, RNAz p=0.99651

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-156, gnl|bosTau2|chr10 (45569315-45569166)
               

               
               1-156, gnl|Hg17|chr14 (54588136-54588278)
               


               
               165-882, gnl|bosTau2|chr10 (45562461-45561759)
               

               
               165-882, gnl|Hg17|chr14 (54599079-54599796)
               

               
               165-882, gnl|Mm7|chr14 (42638147-42638855)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-156, gnl|bosTau2|chr10 (45569315-45569166)
               

               
               1-156, gnl|Hg17|chr14 (54588136-54588278)
               


               
               165-882, gnl|bosTau2|chr10 (45562461-45561759)
               

               
               165-882, gnl|Hg17|chr14 (54599079-54599796)
               

               
               165-882, gnl|Mm7|chr14 (42638147-42638855)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               sme (0.305437)
               

               
               cte (0.29274)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               cmu (0.186393)
               

               
               duo (0.172801)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               jej (0.0989218)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               cte (0.29274)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               cmu (0.186393)
               

               
               duo (0.172801)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               jej (0.0989218)

	1-156, gnl\|bosTau2\|chr10 (45569315-45569166)
	1-156, gnl\|Hg17\|chr14 (54588136-54588278)

	165-882, gnl\|bosTau2\|chr10 (45562461-45561759)
	165-882, gnl\|Hg17\|chr14 (54599079-54599796)
	165-882, gnl\|Mm7\|chr14 (42638147-42638855)

	sme (0.305437)
	cte (0.29274)
	nms (0.213858)
	hea (0.204499)
	cmu (0.186393)
	duo (0.172801)
	cag (0.151194)
	fat (0.147427)
	hyp (0.142837)
	lyg (0.133103)
	ute (0.132784)
	cov (0.132153)
	ese (0.126502)
	eep (0.122564)
	jej (0.0989218)