Non-Coding RNA Search

Ss1.1-unkn-56F12.5

Sequence:


               
               ATTGCCGCCTACGTGTTATCCAAATACCAGTACTTTGTCTGCCCAGTGGAATATCGCAGT
GACATCAACTCCTTCGTTACAGAATGTGAACCCTCAGAACTTTTCCAGCTTCAGAGCTAC
TCACTGCCTCCCTCGCTGAAGGCCGTGTTAAGACAGGAAGCTGTGAGCTTGTATCCTTTC
CAGATACACAGCATCGCTCTTTCCACGTTTGCATCTTTGATTGGCCCATTTGGAGGCTTC
TTTGCCAGCGGATTCAAAAGAGCTTTCAAAATCAAGGATTTTGCGAACACCATTCCTGGC
CATGGCGGAATAATGGACCGATTTGATTGTCAGTATTTGATGGCGACTTTTGTGCATGTG
TACATCACAAGTTTTATAAGGGGTCCAAATCCCAGCAAAGTGCTACAGCAGTTGTTGGTG
CTTCAACCAGAACAGCAGTTAAATATATATAAAACGCTGAAGATTCATCTCATTGAGAAA
GGAATCCTACAGCCAACCTTGAAGGTATAACTGGACCCAGAGAGAGAAGGACTGACAATA
AAGAATTGTACAGAAAGGCACTGACAGATGACATTTTGTAGTTGTACAGAAACATGGTTG
AAAAGGCAATAGATTGAATTTTTACAGACATGAATGTTTCTTCTCTGAAATTACTGTGAA
TATTTAACACTTACTTGATCTAAGTTATGAAAATAAGTAGCAAATTGCCGGCAAAATATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTGCCGCCTACGTGTTATCCAAATACCAGTACTTTGTCTGCCCAGTGGAATATCGCAGT
GACATCAACTCCTTCGTTACAGAATGTGAACCCTCAGAACTTTTCCAGCTTCAGAGCTAC
TCACTGCCTCCCTCGCTGAAGGCCGTGTTAAGACAGGAAGCTGTGAGCTTGTATCCTTTC
CAGATACACAGCATCGCTCTTTCCACGTTTGCATCTTTGATTGGCCCATTTGGAGGCTTC
TTTGCCAGCGGATTCAAAAGAGCTTTCAAAATCAAGGATTTTGCGAACACCATTCCTGGC
CATGGCGGAATAATGGACCGATTTGATTGTCAGTATTTGATGGCGACTTTTGTGCATGTG
TACATCACAAGTTTTATAAGGGGTCCAAATCCCAGCAAAGTGCTACAGCAGTTGTTGGTG
CTTCAACCAGAACAGCAGTTAAATATATATAAAACGCTGAAGATTCATCTCATTGAGAAA
GGAATCCTACAGCCAACCTTGAAGGTATAACTGGACCCAGAGAGAGAAGGACTGACAATA
AAGAATTGTACAGAAAGGCACTGACAGATGACATTTTGTAGTTGTACAGAAACATGGTTG
AAAAGGCAATAGATTGAATTTTTACAGACATGAATGTTTCTTCTCTGAAATTACTGTGAA
TATTTAACACTTACTTGATCTAAGTTATGAAAATAAGTAGCAAATTGCCGGCAAAATATC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               374-492, - strand, RNAz p=0.554978

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               374-492, - strand, RNAz p=0.554978

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               374-720, gnl|bosTau2|chr6 (58011767-58011421)
               

               
               374-720, gnl|Hg17|chr4 (85926882-85927224)
               

               
               374-720, gnl|Mm7|chr5 (101009791-101010134)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               374-720, gnl|bosTau2|chr6 (58011767-58011421)
               

               
               374-720, gnl|Hg17|chr4 (85926882-85927224)
               

               
               374-720, gnl|Mm7|chr5 (101009791-101010134)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               tes (0.207814)
               

               
               pla (0.133672)
               

               
               clu (0.119646)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               pla (0.133672)
               

               
               clu (0.119646)

	374-720, gnl\|bosTau2\|chr6 (58011767-58011421)
	374-720, gnl\|Hg17\|chr4 (85926882-85927224)
	374-720, gnl\|Mm7\|chr5 (101009791-101010134)