Ss1.1-unkn-58E04.5
|
CCATACCTGAAGACCAAGTTCATCTGTGTGACACCAACGACCTGCAGCAATACCATTGAC
CTGCCGATGTCCCCCCGCACTTTAGATTCATTGATGCAGTTTGGAAATAATGGTGAAGGT
GCTGAGCCCTCAGCAGGAGGGCAGTTTGAGTCCCTCACCTTCGACATGGAGCTGAACTCG
GAGTGCGCTACCTCCCCCATGTGAGGAGCCGAGGACAGGAGCTGCAGAGAGCGATGACAA
GGCACCTCCCCGCGGTCCACCACCCCTTAAACAGCCCCACCCCAGATCAACTCAACTCCC
AACTTTGTGGTTCCAGATTTTCTTTTTTTCTGTCTCCTACTTTGGCTATCTTTGAGCAAT
CTGGGCACTTTTTAAAATAGAGAAAGGAGTGAATGTGGGTGATACGCTTTTATCTAAATG
CAAATAAGGATGCGCTCTCTGAGACTGTGATCAGGGGAGGTGGAAGGGGTGGTGAGAGGA
AGAAAGAGGAAATGTCTTTTTTGTCCCCCCCTCCCTTCTCAGCAGCTTGTTGTTGTTGTT
GTCAGACAAGTGCCTCCGGTGCCAGCGGCATCCCTCTGCCCCTTTCTGTAAGCTAATGCC
ACAGGCTGCCTCTCGCTACATCCTCCTGGCATTGCACTTTTATCCTTGCTAATGTCCAAA
TAGAAGATAGGACTTTTAAAGCCCCTAAGTTTCTTTTTAAACTGATACAAAAATTTTTTT
TTAAAGGGCAAAAAAAACACTGCATCGGCGTAGCATTTTCTATATTTAAGAAAACTCAGT
TAGTAGCCTCCTTGGTGCTTTAGCCATTCAGCTTTCTTCAGGCTGATAATTTATATAAAC
TTCGACATGAGCTTCAGGTCCAATCCTTAAAAAGACATCTGAAGATGTGGCTTAGCATTT
GGTTTTGAGATAGGAAGGTTGAAGGAGACCCTAAACGTTCTAGACTTTTTACGAACCAGG
TTTTTATTTTTCCCTTTAACGTGTTGGCCTATTAGTAGGTGAGGCTGGGCAGAGGGGCCC
TTTCTCCCTGGACTTTGCTCCTGTCTCCGAGCCTGGGTGGCTTCTGTGGGTGCCTTACAA
GGGACAGATGATTCTCCCTGCCCCTCCCCAACCCCCTCTTGTGGCATGGCTTCTTCTAGT
GTCTAAAGGTCCCTTGTCCCGTTTGCTTTAGGCATCCTGGTCTCAGGACCTTCTGGAAAA
AGAGGGAGAGAGTTACAGGTTGAAGACGACTCCAACTATGGGGCCCCAGTCAAGGGTCTA
GTTGAGCTCAGGGAATATGGTTCTTGTTCCAGTTTCTTGGCGATTTTCAGAGGCACCTGT
AATCACTTCTTCACTTGGTTAACCCAGGGGGCAAAGGCTTAGTGATAAACCTCGGGTGAG
GGAGTGGGCACCCCAGCCTCCCTGCAGCGCTGGTGACTATCTCTCCTCTACCCCCCGCCC
CAGGGCCCCAAGATGAGGCAGAACAACTCGCATTTACTGTGCATCTCAGAACACTTAGTA
GCATGCAAGGTGGTCTCTGACATGGGGCTTCCTCAGACCCAAAGGCATGGCTAGATGTGG
GTGGTCCAAGACCGCCTTGTCTCAGTTGACCAGAGTTTCTAGGGAATTCTACTCATGACA
CCCAAATTCGCCAGTTTTTGAAAGAAGGGGGTGAGACCCTCTAAGACAAACAGGGGTTGA
TAAGTAGTGGGGAGCAGTCCCCCTCCCTGCAACACTCTCTAGGTTGTAATAAGCTTAACT
TCAGGGACCTGGGGAAGGATCTGGGCTTCGCTGGAGTAGAAATTGTAAAACCCTGTGGCT
TTTAGGTAGCATGTGTATCTGGTTTTGAACCCTGATTGTAGCAAAAGCCCAGAGAGGAGC
TGTTCTGGCCCCTCCCTCAAAGAACCCAGTCCTCCAGGACCTGCCTGCTTTCTCTCCACC
GTCTCCCTGCGGACCCCTGCCCAGCCGAGGGATTCCCGTGGACGGCGGAACCTCCCCACA
CGGTGGTTTGTGAGACGCTGTCCTGGCCACTGCATTCAAATTCCAATGTATACTTACTTA
ATAGTGTAAAAATTTATATTATTGTGGGTTTTTGGTTTTTTTTGTATATTGCTGTATCTA
ACTTCCAGAAATAAAAGTTATATAGCAACTGAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCATACCTGAAGACCAAGTTCATCTGTGTGACACCAACGACCTGCAGCAATACCATTGAC
CTGCCGATGTCCCCCCGCACTTTAGATTCATTGATGCAGTTTGGAAATAATGGTGAAGGT
GCTGAGCCCTCAGCAGGAGGGCAGTTTGAGTCCCTCACCTTCGACATGGAGCTGAACTCG
GAGTGCGCTACCTCCCCCATGTGAGGAGCCGAGGACAGGAGCTGCAGAGAGCGATGACAA
GGCACCTCCCCGCGGTCCACCACCCCTTAAACAGCCCCACCCCAGATCAACTCAACTCCC
AACTTTGTGGTTCCAGATTTTCTTTTTTTCTGTCTCCTACTTTGGCTATCTTTGAGCAAT
CTGGGCACTTTTTAAAATAGAGAAAGGAGTGAATGTGGGTGATACGCTTTTATCTAAATG
CAAATAAGGATGCGCTCTCTGAGACTGTGATCAGGGGAGGTGGAAGGGGTGGTGAGAGGA
AGAAAGAGGAAATGTCTTTTTTGTCCCCCCCTCCCTTCTCAGCAGCTTGTTGTTGTTGTT
GTCAGACAAGTGCCTCCGGTGCCAGCGGCATCCCTCTGCCCCTTTCTGTAAGCTAATGCC
ACAGGCTGCCTCTCGCTACATCCTCCTGGCATTGCACTTTTATCCTTGCTAATGTCCAAA
TAGAAGATAGGACTTTTAAAGCCCCTAAGTTTCTTTTTAAACTGATACAAAAATTTTTTT
TTAAAGGGCAAAAAAAACACTGCATCGGCGTAGCATTTTCTATATTTAAGAAAACTCAGT
TAGTAGCCTCCTTGGTGCTTTAGCCATTCAGCTTTCTTCAGGCTGATAATTTATATAAAC
TTCGACATGAGCTTCAGGTCCAATCCTTAAAAAGACATCTGAAGATGTGGCTTAGCATTT
GGTTTTGAGATAGGAAGGTTGAAGGAGACCCTAAACGTTCTAGACTTTTTACGAACCAGG
TTTTTATTTTTCCCTTTAACGTGTTGGCCTATTAGTAGGTGAGGCTGGGCAGAGGGGCCC
TTTCTCCCTGGACTTTGCTCCTGTCTCCGAGCCTGGGTGGCTTCTGTGGGTGCCTTACAA
GGGACAGATGATTCTCCCTGCCCCTCCCCAACCCCCTCTTGTGGCATGGCTTCTTCTAGT
GTCTAAAGGTCCCTTGTCCCGTTTGCTTTAGGCATCCTGGTCTCAGGACCTTCTGGAAAA
AGAGGGAGAGAGTTACAGGTTGAAGACGACTCCAACTATGGGGCCCCAGTCAAGGGTCTA
GTTGAGCTCAGGGAATATGGTTCTTGTTCCAGTTTCTTGGCGATTTTCAGAGGCACCTGT
AATCACTTCTTCACTTGGTTAACCCAGGGGGCAAAGGCTTAGTGATAAACCTCGGGTGAG
GGAGTGGGCACCCCAGCCTCCCTGCAGCGCTGGTGACTATCTCTCCTCTACCCCCCGCCC
CAGGGCCCCAAGATGAGGCAGAACAACTCGCATTTACTGTGCATCTCAGAACACTTAGTA
GCATGCAAGGTGGTCTCTGACATGGGGCTTCCTCAGACCCAAAGGCATGGCTAGATGTGG
GTGGTCCAAGACCGCCTTGTCTCAGTTGACCAGAGTTTCTAGGGAATTCTACTCATGACA
CCCAAATTCGCCAGTTTTTGAAAGAAGGGGGTGAGACCCTCTAAGACAAACAGGGGTTGA
TAAGTAGTGGGGAGCAGTCCCCCTCCCTGCAACACTCTCTAGGTTGTAATAAGCTTAACT
TCAGGGACCTGGGGAAGGATCTGGGCTTCGCTGGAGTAGAAATTGTAAAACCCTGTGGCT
TTTAGGTAGCATGTGTATCTGGTTTTGAACCCTGATTGTAGCAAAAGCCCAGAGAGGAGC
TGTTCTGGCCCCTCCCTCAAAGAACCCAGTCCTCCAGGACCTGCCTGCTTTCTCTCCACC
GTCTCCCTGCGGACCCCTGCCCAGCCGAGGGATTCCCGTGGACGGCGGAACCTCCCCACA
CGGTGGTTTGTGAGACGCTGTCCTGGCCACTGCATTCAAATTCCAATGTATACTTACTTA
ATAGTGTAAAAATTTATATTATTGTGGGTTTTTGGTTTTTTTTGTATATTGCTGTATCTA
ACTTCCAGAAATAAAAGTTATATAGCAACTGAAAAAAAAAAAAAAAAA
|
|
gi|13272530|gb|AAK17195.1| |
Protein identifier
|
gi|13272530|gb|AAK17195.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
148-1886, gnl|bosTau2|chr19 (36811738-36810008) |
|
148-1886, gnl|Hg17|chr17 (37721345-37719118) |
|
148-1886, gnl|Mm7|chr11 (100997800-100996079) |
| |
|
1922-2122, gnl|bosTau2|chr19 (36809998-36809783) |
|
1922-2122, gnl|canFam2|chr9 (23932261-23931815) |
|
1922-2122, gnl|dasNov1|scaffold_17693 (13432-13855) |
|
1922-2122, gnl|echTel1|scaffold_318808 (35947-35493) |
|
1922-2122, gnl|hg17|chr17 (37718848-37719332) |
|
1922-2122, gnl|Hg17|chr17 (37719108-37718879) |
|
1922-2122, gnl|loxAfr1|scaffold_2644 (101598-102068) |
|
1922-2122, gnl|mm7|chr11 (100995833-100996246) |
|
1922-2122, gnl|Mm7|chr11 (100996069-100995860) |
|
1922-2122, gnl|monDom2|scaffold_18 (52670470-52670987) |
|
1922-2122, gnl|oryCun1|scaffold_157730 (4296-4745) |
|
1922-2122, gnl|panTro1|chr19 (40922367-40922852) |
|
1922-2122, gnl|rheMac2|chr16 (52425575-52426061) |
|
1922-2122, gnl|rn3|chr10 (89835428-89835848) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
148-1886, gnl|bosTau2|chr19 (36811738-36810008) |
|
148-1886, gnl|Hg17|chr17 (37721345-37719118) |
|
148-1886, gnl|Mm7|chr11 (100997800-100996079) |
| |
|
1922-2122, gnl|bosTau2|chr19 (36809998-36809783) |
|
1922-2122, gnl|canFam2|chr9 (23932261-23931815) |
|
1922-2122, gnl|dasNov1|scaffold_17693 (13432-13855) |
|
1922-2122, gnl|echTel1|scaffold_318808 (35947-35493) |
|
1922-2122, gnl|hg17|chr17 (37718848-37719332) |
|
1922-2122, gnl|Hg17|chr17 (37719108-37718879) |
|
1922-2122, gnl|loxAfr1|scaffold_2644 (101598-102068) |
|
1922-2122, gnl|mm7|chr11 (100995833-100996246) |
|
1922-2122, gnl|Mm7|chr11 (100996069-100995860) |
|
1922-2122, gnl|monDom2|scaffold_18 (52670470-52670987) |
|
1922-2122, gnl|oryCun1|scaffold_157730 (4296-4745) |
|
1922-2122, gnl|panTro1|chr19 (40922367-40922852) |
|
1922-2122, gnl|rheMac2|chr16 (52425575-52426061) |
|
1922-2122, gnl|rn3|chr10 (89835428-89835848) |
|
cbr (1.53571) |
|
clu (0.837521) |
|
cga (0.558191) |
|
mcp (0.511945) |
|
cut (0.509771) |
|
cje (0.495704) |
|
sto (0.359648) |
|
cty (0.31224) |
|
jej (0.296765) |
|
lnt (0.284616) |
|
nmm (0.265604) |
|
ova (0.258264) |
|
cly (0.241284) |
|
nbm (0.198649) |
|
col (0.195008) |
|
gul (0.177588) |
|
fty (0.17584) |
|
ton (0.1755) |
|
fbs (0.175346) |
|
cki (0.165235) |
|
cli (0.152812) |
|
pty (0.142714) |
|
csk (0.140746) |
|
nca (0.136874) |
|
che (0.136314) |
|
ssp (0.13552) |
|
pla (0.133672) |
|
ute (0.132784) |
|
sug (0.127291) |
|
thg (0.126791) |
|
pgl (0.118483) |
|
ebs (0.118301) |
|
cbl (0.114797) |
|
eje (0.0988338) |
|
cbr (1.53571) |
|
clu (0.837521) |
|
cga (0.558191) |
|
mcp (0.511945) |
|
cut (0.509771) |
|
cje (0.495704) |
|
sto (0.359648) |
|
cty (0.31224) |
|
jej (0.296765) |
|
lnt (0.284616) |
|
nmm (0.265604) |
|
ova (0.258264) |
|
cly (0.241284) |
|
nbm (0.198649) |
|
col (0.195008) |
|
gul (0.177588) |
|
fty (0.17584) |
|
ton (0.1755) |
|
fbs (0.175346) |
|
cki (0.165235) |
|
cli (0.152812) |
|
pty (0.142714) |
|
csk (0.140746) |
|
nca (0.136874) |
|
che (0.136314) |
|
ssp (0.13552) |
|
pla (0.133672) |
|
ute (0.132784) |
|
sug (0.127291) |
|
thg (0.126791) |
|
pgl (0.118483) |
|
ebs (0.118301) |
|
cbl (0.114797) |
|
eje (0.0988338) |
