Non-Coding RNA Search

Ss1.1-unkn-AR034A04PBC05AA04S.5

Sequence:


               
               TTCGGCACCAGCCCGGCCCTTTCTTGGGGACTAACCTCTGGAGCCGAGGATTCGGTGCCC
AGCCCCCACCCAGGCGTCTCAATTTTTGGTGACTGTGCCCGTAGTTCAGATGGTCCGTTG
GGTTCTTGATCGTTTTTCCGTACTCCGACTTACTGCTACACTCTTCTCTGCATCTGGAGA
TTCCTCCGGTTCGTTTGATCTTTCGCCCGACACTTATAGCCACAGAGTGCCATTGCATAA
GCCTACAGACTGGGAGAAGAAGATCCACGTGCCTGCCAAAGCCTACCTGAGGATTGCTAC
CGAAGTGGTAAGAAGATTGCCTCCACCGTCCAGAGTGATTCCCCAAGTGTCCTGGAAATT
TGCCTGTTGCTTGGCAGTAAGACCTTTGGAATCAACAGTATGGTGGTTGAAACCTACAGA
AATAATAGCAATCAGAGTTGTTTTCTTGTATCTCTAAAGAAATAATGTCTTATATTCAGG
TTTGATTTTCTAAGTAATGACTCACAAAGTTTTTACATACCAATGCTTACTGCTACATGT
AGGAATTTTTTGGAAAGCTAATGTGTACCAACATCACAGAACCCCATTTTTTTTTATTGA
GCTACCTCTGAAGGAATGATGAGTTTATATTACAAGCCCAACCTTCAATCAGGAGAGAGC
TGTGATTTTTTTGTTTTGTTTTGCAGTACTACAGAGTTGGCCATTTAAAGGATTTACTAA
ATGTGTGTATGGACATAAGTGTGACACTTCTCCTTCAGGCAGTTTGTTCTTGGTTTGAAT
TCTGGACACATTCTTAATATAGATAAACTTCTGCTTCTTCATCTAGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCGGCACCAGCCCGGCCCTTTCTTGGGGACTAACCTCTGGAGCCGAGGATTCGGTGCCC
AGCCCCCACCCAGGCGTCTCAATTTTTGGTGACTGTGCCCGTAGTTCAGATGGTCCGTTG
GGTTCTTGATCGTTTTTCCGTACTCCGACTTACTGCTACACTCTTCTCTGCATCTGGAGA
TTCCTCCGGTTCGTTTGATCTTTCGCCCGACACTTATAGCCACAGAGTGCCATTGCATAA
GCCTACAGACTGGGAGAAGAAGATCCACGTGCCTGCCAAAGCCTACCTGAGGATTGCTAC
CGAAGTGGTAAGAAGATTGCCTCCACCGTCCAGAGTGATTCCCCAAGTGTCCTGGAAATT
TGCCTGTTGCTTGGCAGTAAGACCTTTGGAATCAACAGTATGGTGGTTGAAACCTACAGA
AATAATAGCAATCAGAGTTGTTTTCTTGTATCTCTAAAGAAATAATGTCTTATATTCAGG
TTTGATTTTCTAAGTAATGACTCACAAAGTTTTTACATACCAATGCTTACTGCTACATGT
AGGAATTTTTTGGAAAGCTAATGTGTACCAACATCACAGAACCCCATTTTTTTTTATTGA
GCTACCTCTGAAGGAATGATGAGTTTATATTACAAGCCCAACCTTCAATCAGGAGAGAGC
TGTGATTTTTTTGTTTTGTTTTGCAGTACTACAGAGTTGGCCATTTAAAGGATTTACTAA
ATGTGTGTATGGACATAAGTGTGACACTTCTCCTTCAGGCAGTTTGTTCTTGGTTTGAAT
TCTGGACACATTCTTAATATAGATAAACTTCTGCTTCTTCATCTAGAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               314-428, - strand, RNAz p=0.87831

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               314-428, - strand, RNAz p=0.87831

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               275-529, gnl|bosTau2|chr21 (28402702-28402444)
               

               
               275-529, gnl|Hg17|chr14 (31398075-31398320)
               

               
               275-529, gnl|Mm7|chr12 (50323555-50323813)
               


               
               540-783, gnl|bosTau2|chr21 (28402415-28402186)
               

               
               540-783, gnl|canFam2|chr8 (13999253-13999437)
               

               
               540-783, gnl|dasNov1|scaffold_22231 (14473-14667)
               

               
               540-783, gnl|echTel1|scaffold_297253 (3867-4095)
               

               
               540-783, gnl|hg17|chr14 (31398303-31398484)
               

               
               540-783, gnl|Hg17|chr14 (31398331-31398560)
               

               
               540-783, gnl|loxAfr1|scaffold_14944 (37628-37438)
               

               
               540-783, gnl|mm7|chr12 (50323798-50323968)
               

               
               540-783, gnl|Mm7|chr12 (50323831-50324033)
               

               
               540-783, gnl|monDom2|scaffold_53 (4634433-4634618)
               

               
               540-783, gnl|oryCun1|scaffold_190205 (50471-50303)
               

               
               540-783, gnl|panTro1|chr15 (30551534-30551715)
               

               
               540-783, gnl|rheMac2|chr7 (94789406-94789587)
               

               
               540-783, gnl|rn3|chr6 (72479330-72479498)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               275-529, gnl|bosTau2|chr21 (28402702-28402444)
               

               
               275-529, gnl|Hg17|chr14 (31398075-31398320)
               

               
               275-529, gnl|Mm7|chr12 (50323555-50323813)
               


               
               540-783, gnl|bosTau2|chr21 (28402415-28402186)
               

               
               540-783, gnl|canFam2|chr8 (13999253-13999437)
               

               
               540-783, gnl|dasNov1|scaffold_22231 (14473-14667)
               

               
               540-783, gnl|echTel1|scaffold_297253 (3867-4095)
               

               
               540-783, gnl|hg17|chr14 (31398303-31398484)
               

               
               540-783, gnl|Hg17|chr14 (31398331-31398560)
               

               
               540-783, gnl|loxAfr1|scaffold_14944 (37628-37438)
               

               
               540-783, gnl|mm7|chr12 (50323798-50323968)
               

               
               540-783, gnl|Mm7|chr12 (50323831-50324033)
               

               
               540-783, gnl|monDom2|scaffold_53 (4634433-4634618)
               

               
               540-783, gnl|oryCun1|scaffold_190205 (50471-50303)
               

               
               540-783, gnl|panTro1|chr15 (30551534-30551715)
               

               
               540-783, gnl|rheMac2|chr7 (94789406-94789587)
               

               
               540-783, gnl|rn3|chr6 (72479330-72479498)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               bla (0.124347)
               

               
               spc (0.113366)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.124347)
               

               
               spc (0.113366)

	275-529, gnl\|bosTau2\|chr21 (28402702-28402444)
	275-529, gnl\|Hg17\|chr14 (31398075-31398320)
	275-529, gnl\|Mm7\|chr12 (50323555-50323813)

	540-783, gnl\|bosTau2\|chr21 (28402415-28402186)
	540-783, gnl\|canFam2\|chr8 (13999253-13999437)
	540-783, gnl\|dasNov1\|scaffold_22231 (14473-14667)
	540-783, gnl\|echTel1\|scaffold_297253 (3867-4095)
	540-783, gnl\|hg17\|chr14 (31398303-31398484)
	540-783, gnl\|Hg17\|chr14 (31398331-31398560)
	540-783, gnl\|loxAfr1\|scaffold_14944 (37628-37438)
	540-783, gnl\|mm7\|chr12 (50323798-50323968)
	540-783, gnl\|Mm7\|chr12 (50323831-50324033)
	540-783, gnl\|monDom2\|scaffold_53 (4634433-4634618)
	540-783, gnl\|oryCun1\|scaffold_190205 (50471-50303)
	540-783, gnl\|panTro1\|chr15 (30551534-30551715)
	540-783, gnl\|rheMac2\|chr7 (94789406-94789587)
	540-783, gnl\|rn3\|chr6 (72479330-72479498)