Non-Coding RNA Search

Ss1.1-unkn-AR034A12PBC05AA12S.5

Sequence:


               
               AGTGGGCATTTTTGTTTTTAAAGCACAGCCCTTTGGGGAGACAACAGATCATTAAGAACC
ACTGAGATTCCCAAAGGGAACCAGGACTGGACTTTGTCCTCTGTCTCAGGAGGGCCAACA
GCCATGGGGGCAGCTTGGCACCAGGGCCAGAACCCCATCCCCTCTCCAGAGAAGGAACTT
TATTTGCACAACTGGGTGCCTTTTAGCCTTTGTGTACTGAAATGGGCATTTCGGAAGCAG
GAATCCGGGGGCGGCCTCTAGAGAAGTGCGTGAGTCCCCAACCTCAGCGCCTGCACCTTG
TTCTCATCCCTTCCTTTGCCCGTAGGAGGCTGAAACCTGGGAGGGGTGCCACAGAGATTG
AGTTCATCCTCTCCCACGTTGGGATAAAGGCCAGTACTGGGAAGGGTGGGATCTCTCCCA
GGCCTTCCAACGCTGTCCTGAGAAAGGATCTGTTTCTAGCCGGGGATGAGACGAAGACCA
AGTGGCAGCAGTGCTGATGGACCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGGGCATTTTTGTTTTTAAAGCACAGCCCTTTGGGGAGACAACAGATCATTAAGAACC
ACTGAGATTCCCAAAGGGAACCAGGACTGGACTTTGTCCTCTGTCTCAGGAGGGCCAACA
GCCATGGGGGCAGCTTGGCACCAGGGCCAGAACCCCATCCCCTCTCCAGAGAAGGAACTT
TATTTGCACAACTGGGTGCCTTTTAGCCTTTGTGTACTGAAATGGGCATTTCGGAAGCAG
GAATCCGGGGGCGGCCTCTAGAGAAGTGCGTGAGTCCCCAACCTCAGCGCCTGCACCTTG
TTCTCATCCCTTCCTTTGCCCGTAGGAGGCTGAAACCTGGGAGGGGTGCCACAGAGATTG
AGTTCATCCTCTCCCACGTTGGGATAAAGGCCAGTACTGGGAAGGGTGGGATCTCTCCCA
GGCCTTCCAACGCTGTCCTGAGAAAGGATCTGTTTCTAGCCGGGGATGAGACGAAGACCA
AGTGGCAGCAGTGCTGATGGACCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               27-165, + strand, RNAz p=0.836653

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               27-165, + strand, RNAz p=0.836653

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AB032995, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AB032995, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-294, gnl|bosTau2|chr17 (37744199-37743896)
               

               
               2-294, gnl|Hg17|chr12 (112198158-112198475)
               

               
               2-294, gnl|Mm7|chr5 (119769083-119768781)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-294, gnl|bosTau2|chr17 (37744199-37743896)
               

               
               2-294, gnl|Hg17|chr12 (112198158-112198475)
               

               
               2-294, gnl|Mm7|chr5 (119769083-119768781)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fhi (0.169578)
               

               
               eep (0.122564)
               

               
               jej (0.0989218)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               eep (0.122564)
               

               
               jej (0.0989218)

	2-294, gnl\|bosTau2\|chr17 (37744199-37743896)
	2-294, gnl\|Hg17\|chr12 (112198158-112198475)
	2-294, gnl\|Mm7\|chr5 (119769083-119768781)