Ss1.1-unkn-AR065C03IBMBC03S.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGGTCTGAAGGAACATGGGGCTGCATCGGAGGTGGCGGCGACTTCGGCTCCCAGGGTTA CAAGCCTGCGGGCTGCACACGGCAGCTGTGCCCACTCCTCCACACTGGTTGGTAGAGCGG CTTGGCTTTTTTGAGGAGCTATGGACCGCCCAGGTAAAGAAGTTAGCAAGCATGGCGCAG AAGGAACACCGGGCTATTAAGGTATCGCTTCCTGGAGGCAGGAAAGTGGATGCTGTGGCA TGGAACACAACCCCTTACCAACTAGCTCAGCAGATCAGTTCAAAACTGGCAGATACTGCA GTAGCTGCTGTAGTGAATGGAGAACCTTATGATCTGGAACGGCCCTTGGAAAAAGATTCT GACCTCAGATTTCTGACATTCGATTCTGCAGAGGGGAAAGCAGTATTCTGGCACTCCAGC ACCCATGTCCTGGGGGCAGCAGCTGAACAATTCCTAGGTGCTGTCCTCTGCCAAGGTCCA AGTACGGAATGTGGCTTCTACCATGATTTCTTCCTGGGCAAGGAACGGACAGTCCGGGGC TCAGAGCTGCCTGTTTTGGAGCAGATTTGCCAGGAACTTGCAGCTGCTGCTCAACCTTTC CGGAGACTAGAGGCTTCCCGGGATCAGCTTCGCCAGCTCTTCAAGGATAACCCTTTTAAG CTTCGCCTGATTGACGAGAAAATAACAGGTCCAAAGGCAACAGTTTATGGATGCGGAATG TTGGTTGATCTTTGCAGGGGCCCCCACCTGCGGCATACCGGACAGATTGGAGGCCTTAAG CTGCTAACGAATTCATCATCCTTATGGAAGTTTTCAGGCACCCCAGAGACACTGCAGAGA GTGTCAGGAATTTCCTTCCCCACAGCAGAGGAGCTGAGGGCCTGGGAAGAATGGAGGGAA GAAGCAGAGTTACGGGACCACCGGCGCATTGGGAAGGAACAGGAGCTCTTCTTCTTCCAT GAACTGAGCCCTGGGAGCTGTTTCTTCCTTCCTCGAGGGACAAGGGTGTATAATGCATTG GTGGCTTTTATCAGGGCCGAGTATACTCGCCGCGGTTTCTTAGAAGTGAAAACCCCCACG CTGTTTTCTACGAAACTCTGGGAACTGTCAGGGCACTGGGAGCATTATCGGGAAGACATG TTTGCCCTGCAGCCCTCAGGCACTGATGGGCCTGCCAGCTCCCAGAGTGATCACTCTACC AGCCATCCCACAGATACACTCGCCCTCAAGCCAATGAACTGCCCTGCACACTGCCTGATG TTTGCCCACCGGCCTAGATCCTGGCGAGAGCTTCCCCTCCGACTGGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGGTCTGAAGGAACATGGGGCTGCATCGGAGGTGGCGGCGACTTCGGCTCCCAGGGTTA CAAGCCTGCGGGCTGCACACGGCAGCTGTGCCCACTCCTCCACACTGGTTGGTAGAGCGG CTTGGCTTTTTTGAGGAGCTATGGACCGCCCAGGTAAAGAAGTTAGCAAGCATGGCGCAG AAGGAACACCGGGCTATTAAGGTATCGCTTCCTGGAGGCAGGAAAGTGGATGCTGTGGCA TGGAACACAACCCCTTACCAACTAGCTCAGCAGATCAGTTCAAAACTGGCAGATACTGCA GTAGCTGCTGTAGTGAATGGAGAACCTTATGATCTGGAACGGCCCTTGGAAAAAGATTCT GACCTCAGATTTCTGACATTCGATTCTGCAGAGGGGAAAGCAGTATTCTGGCACTCCAGC ACCCATGTCCTGGGGGCAGCAGCTGAACAATTCCTAGGTGCTGTCCTCTGCCAAGGTCCA AGTACGGAATGTGGCTTCTACCATGATTTCTTCCTGGGCAAGGAACGGACAGTCCGGGGC TCAGAGCTGCCTGTTTTGGAGCAGATTTGCCAGGAACTTGCAGCTGCTGCTCAACCTTTC CGGAGACTAGAGGCTTCCCGGGATCAGCTTCGCCAGCTCTTCAAGGATAACCCTTTTAAG CTTCGCCTGATTGACGAGAAAATAACAGGTCCAAAGGCAACAGTTTATGGATGCGGAATG TTGGTTGATCTTTGCAGGGGCCCCCACCTGCGGCATACCGGACAGATTGGAGGCCTTAAG CTGCTAACGAATTCATCATCCTTATGGAAGTTTTCAGGCACCCCAGAGACACTGCAGAGA GTGTCAGGAATTTCCTTCCCCACAGCAGAGGAGCTGAGGGCCTGGGAAGAATGGAGGGAA GAAGCAGAGTTACGGGACCACCGGCGCATTGGGAAGGAACAGGAGCTCTTCTTCTTCCAT GAACTGAGCCCTGGGAGCTGTTTCTTCCTTCCTCGAGGGACAAGGGTGTATAATGCATTG GTGGCTTTTATCAGGGCCGAGTATACTCGCCGCGGTTTCTTAGAAGTGAAAACCCCCACG CTGTTTTCTACGAAACTCTGGGAACTGTCAGGGCACTGGGAGCATTATCGGGAAGACATG TTTGCCCTGCAGCCCTCAGGCACTGATGGGCCTGCCAGCTCCCAGAGTGATCACTCTACC AGCCATCCCACAGATACACTCGCCCTCAAGCCAATGAACTGCCCTGCACACTGCCTGATG TTTGCCCACCGGCCTAGATCCTGGCGAGAGCTTCCCCTCCGACTGGCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 403-1193, - strand, RNAz p=0.944185 | |
| 1075-1188, - strand, RNAz p=0.615196 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 403-1193, - strand, RNAz p=0.944185 | |
| 1075-1188, - strand, RNAz p=0.615196 |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 81-278, gnl|bosTau2|chr3 (17018350-17018153) | |
| 81-278, gnl|canFam2|chr17 (62762040-62761891) | |
| 81-278, gnl|dasNov1|scaffold_146285 (1890-2048) | |
| 81-278, gnl|echTel1|scaffold_314902 (55623-55471) | |
| 81-278, gnl|Hg17|chr1 (147273406-147273603) | |
| 81-278, gnl|hg17|chr4 (136845650-136845801) | |
| 81-278, gnl|loxAfr1|scaffold_15402 (59224-59376) | |
| 81-278, gnl|mm7|chr3 (95628270-95628422) | |
| 81-278, gnl|Mm7|chr3 (95628466-95628269) | |
| 81-278, gnl|oryCun1|scaffold_202125 (56308-56156) | |
| 81-278, gnl|panTro1|chr3 (153895904-153896055) | |
| 81-278, gnl|rheMac2|chr5 (127952602-127952776) | |
| 81-278, gnl|rn3|chr2 (190510048-190510200) | |
| 403-533, gnl|bosTau2|chr3 (17017037-17016907) | |
| 403-533, gnl|canFam2|chr17 (62763813-62763947) | |
| 403-533, gnl|danRer3|chr5 (45976779-45976652) | |
| 403-533, gnl|dasNov1|scaffold_146285 (799-665) | |
| 403-533, gnl|echTel1|scaffold_314902 (57845-57979) | |
| 403-533, gnl|fr1|chrUn (175501814-175501941) | |
| 403-533, gnl|hg17|chr1 (147276146-147276280) | |
| 403-533, gnl|Hg17|chr1 (147276150-147276280) | |
| 403-533, gnl|loxAfr1|scaffold_1528 (1042-923) | |
| 403-533, gnl|mm7|chr3 (95625586-95625452) | |
| 403-533, gnl|Mm7|chr3 (95625580-95625450) | |
| 403-533, gnl|monDom2|scaffold_44 (3650133-3650267) | |
| 403-533, gnl|oryCun1|scaffold_202125 (59708-59842) | |
| 403-533, gnl|panTro1|chr1 (129000020-129000154) | |
| 403-533, gnl|rheMac2|chr1 (128870676-128870810) | |
| 403-533, gnl|rn3|chr2 (190506481-190506347) | |
| 403-533, gnl|tetNig1|chr12 (5558958-5558834) | |
| 403-533, gnl|xenTro1|scaffold_1304 (92313-92196) | |
| 789-942, gnl|bosTau2|chr3 (17014314-17014161) | |
| 789-942, gnl|Hg17|chr1 (147282030-147282183) | |
| 789-942, gnl|Mm7|chr3 (95622584-95622431) | |
| 1035-1253, gnl|bosTau2|chr3 (17013360-17013142) | |
| 1035-1253, gnl|canFam2|chr17 (62767455-62767279) | |
| 1035-1253, gnl|echTel1|scaffold_314902 (63750-63583) | |
| 1035-1253, gnl|fr1|chrUn (262607251-262607057) | |
| 1035-1253, gnl|Hg17|chr1 (147283078-147283296) | |
| 1035-1253, gnl|hg17|chr4 (136844758-136844912) | |
| 1035-1253, gnl|loxAfr1|scaffold_15402 (53591-53758) | |
| 1035-1253, gnl|mm7|chr3 (95621390-95621567) | |
| 1035-1253, gnl|Mm7|chr3 (95621607-95621389) | |
| 1035-1253, gnl|oryCun1|scaffold_202125 (62928-62751) | |
| 1035-1253, gnl|panTro1|chr3 (153895012-153895166) | |
| 1035-1253, gnl|rheMac2|chr5 (127951686-127951840) | |
| 1035-1253, gnl|rn3|chr2 (190502574-190502751) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 81-278, gnl|bosTau2|chr3 (17018350-17018153) | |
| 81-278, gnl|canFam2|chr17 (62762040-62761891) | |
| 81-278, gnl|dasNov1|scaffold_146285 (1890-2048) | |
| 81-278, gnl|echTel1|scaffold_314902 (55623-55471) | |
| 81-278, gnl|Hg17|chr1 (147273406-147273603) | |
| 81-278, gnl|hg17|chr4 (136845650-136845801) | |
| 81-278, gnl|loxAfr1|scaffold_15402 (59224-59376) | |
| 81-278, gnl|mm7|chr3 (95628270-95628422) | |
| 81-278, gnl|Mm7|chr3 (95628466-95628269) | |
| 81-278, gnl|oryCun1|scaffold_202125 (56308-56156) | |
| 81-278, gnl|panTro1|chr3 (153895904-153896055) | |
| 81-278, gnl|rheMac2|chr5 (127952602-127952776) | |
| 81-278, gnl|rn3|chr2 (190510048-190510200) | |
| 403-533, gnl|bosTau2|chr3 (17017037-17016907) | |
| 403-533, gnl|canFam2|chr17 (62763813-62763947) | |
| 403-533, gnl|danRer3|chr5 (45976779-45976652) | |
| 403-533, gnl|dasNov1|scaffold_146285 (799-665) | |
| 403-533, gnl|echTel1|scaffold_314902 (57845-57979) | |
| 403-533, gnl|fr1|chrUn (175501814-175501941) | |
| 403-533, gnl|hg17|chr1 (147276146-147276280) | |
| 403-533, gnl|Hg17|chr1 (147276150-147276280) | |
| 403-533, gnl|loxAfr1|scaffold_1528 (1042-923) | |
| 403-533, gnl|mm7|chr3 (95625586-95625452) | |
| 403-533, gnl|Mm7|chr3 (95625580-95625450) | |
| 403-533, gnl|monDom2|scaffold_44 (3650133-3650267) | |
| 403-533, gnl|oryCun1|scaffold_202125 (59708-59842) | |
| 403-533, gnl|panTro1|chr1 (129000020-129000154) | |
| 403-533, gnl|rheMac2|chr1 (128870676-128870810) | |
| 403-533, gnl|rn3|chr2 (190506481-190506347) | |
| 403-533, gnl|tetNig1|chr12 (5558958-5558834) | |
| 403-533, gnl|xenTro1|scaffold_1304 (92313-92196) | |
| 789-942, gnl|bosTau2|chr3 (17014314-17014161) | |
| 789-942, gnl|Hg17|chr1 (147282030-147282183) | |
| 789-942, gnl|Mm7|chr3 (95622584-95622431) | |
| 1035-1253, gnl|bosTau2|chr3 (17013360-17013142) | |
| 1035-1253, gnl|canFam2|chr17 (62767455-62767279) | |
| 1035-1253, gnl|echTel1|scaffold_314902 (63750-63583) | |
| 1035-1253, gnl|fr1|chrUn (262607251-262607057) | |
| 1035-1253, gnl|Hg17|chr1 (147283078-147283296) | |
| 1035-1253, gnl|hg17|chr4 (136844758-136844912) | |
| 1035-1253, gnl|loxAfr1|scaffold_15402 (53591-53758) | |
| 1035-1253, gnl|mm7|chr3 (95621390-95621567) | |
| 1035-1253, gnl|Mm7|chr3 (95621607-95621389) | |
| 1035-1253, gnl|oryCun1|scaffold_202125 (62928-62751) | |
| 1035-1253, gnl|panTro1|chr3 (153895012-153895166) | |
| 1035-1253, gnl|rheMac2|chr5 (127951686-127951840) | |
| 1035-1253, gnl|rn3|chr2 (190502574-190502751) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.16592) | |
| nmm (0.132802) | |
| jca (0.11396) |