Non-Coding RNA Search

Ss1.1-unkn-AR066C03IBMCC03S.5

Sequence:


               
               CAGAGGGGCTAGGGGGCTTCTAGGGCTTCCTGGGACCCCTACCTGGGCCTGCTTCTTGAT
AAGCCTGGACCATCCAAAGAAGAGGAGGTCAGTAAGCCCATCACTAAAACACCACTCAGC
CCCAGCAAAGGCAGAAAGGCTCCCAGATGCCCCCAGCATCCCTCCCCCAACATCCCCATC
TCATTGGGCTGGGCCTCCCACTTCAAAGGCCAGAGAATGCTTTGTCCAGACCTGTCCACT
AGCCTTTTGTACTTTTTTCCTGTAATTTCAGTGTCTTAAACTGGTTTAAGGTTTGATTCG
GTTTGGCTTGGTTTTGAGAAACTCCTGAGTGTGCCTGAATCTCTGTTCTTTTTCTTCTCA
GAGCCCTTAGCAGTGTGGGGGGGATCGAAATCATTCGTTCATTCTTTN

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAGGGGCTAGGGGGCTTCTAGGGCTTCCTGGGACCCCTACCTGGGCCTGCTTCTTGAT
AAGCCTGGACCATCCAAAGAAGAGGAGGTCAGTAAGCCCATCACTAAAACACCACTCAGC
CCCAGCAAAGGCAGAAAGGCTCCCAGATGCCCCCAGCATCCCTCCCCCAACATCCCCATC
TCATTGGGCTGGGCCTCCCACTTCAAAGGCCAGAGAATGCTTTGTCCAGACCTGTCCACT
AGCCTTTTGTACTTTTTTCCTGTAATTTCAGTGTCTTAAACTGGTTTAAGGTTTGATTCG
GTTTGGCTTGGTTTTGAGAAACTCCTGAGTGTGCCTGAATCTCTGTTCTTTTTCTTCTCA
GAGCCCTTAGCAGTGTGGGGGGGATCGAAATCATTCGTTCATTCTTTN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               3-248, - strand, RNAz p=0.807893

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-248, - strand, RNAz p=0.807893

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-365, gnl|bosTau2|chr3 (76497244-76497633)
               

               
               3-365, gnl|Hg17|chr1 (36601071-36600706)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-365, gnl|bosTau2|chr3 (76497244-76497633)
               

               
               3-365, gnl|Hg17|chr1 (36601071-36600706)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nlu (0.191681)
               

               
               cly (0.120642)
               

               
               nbm (0.0993246)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               cly (0.120642)
               

               
               nbm (0.0993246)

	3-365, gnl\|bosTau2\|chr3 (76497244-76497633)
	3-365, gnl\|Hg17\|chr1 (36601071-36600706)