Non-Coding RNA Search

Ss1.1-unkn-AR067A06iLNAA06S.5

Sequence:


               
               ATACTGAAGAGTGGGTTAGATTGGCAGAAATGTCCCTGGAACAAGACAATATTAAGCAGG
CTATTTTTTGCTACACAAAAGCACTCAAATATGAACCTACTAATGTTCGTTATCTGTGGG
AGCGATCAAGCCTTTATGAACAAATGGGAGATCACAAAATGGCAATGGATGGTTATAGGC
GTATTTTAAACCTTTTGGCTCCGTCTGATGGAGACCGGTTTATGCAGTTGGCTAGAGATA
TGGCAAAGAGTTACTATGAAGCCAGTGATGTTATTTCAGCTATTAATGTAATTGAAGAAG
CTTTCTCAAAGCACCCGGGCCTAGTCTCTATGGAAGATGTTAACATTGCAGGAGAACTGT
ACATTTCTAACAAACAATATGACAAAGCTTTGGAGGTAATTGCAGATTTTTCTGGAATTG
TGCTTGAAAAAAGATCTACAGAAGAAGGCACAGAAGAGAATACAGCTGATGATAATGTTA
CCTGTATTGTACCTGATGGCGTGCCAATAGATATCACAGTGAAGCTGATGGTCTGCCTTG
TACATCTCAACATTCTTGAACCACTTAATCCTCTCTTGACAACACTAGTGGAACAGAATC
CTGAAGACATGGGAGACCTCTATCTAGATGTTGCTGAAGCTTTTCTGGATGTTGGTGAAT
ATAATTCTGCAC------------GTGCACTAGTCT------------------------
------------GGCATGCAGAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATACTGAAGAGTGGGTTAGATTGGCAGAAATGTCCCTGGAACAAGACAATATTAAGCAGG
CTATTTTTTGCTACACAAAAGCACTCAAATATGAACCTACTAATGTTCGTTATCTGTGGG
AGCGATCAAGCCTTTATGAACAAATGGGAGATCACAAAATGGCAATGGATGGTTATAGGC
GTATTTTAAACCTTTTGGCTCCGTCTGATGGAGACCGGTTTATGCAGTTGGCTAGAGATA
TGGCAAAGAGTTACTATGAAGCCAGTGATGTTATTTCAGCTATTAATGTAATTGAAGAAG
CTTTCTCAAAGCACCCGGGCCTAGTCTCTATGGAAGATGTTAACATTGCAGGAGAACTGT
ACATTTCTAACAAACAATATGACAAAGCTTTGGAGGTAATTGCAGATTTTTCTGGAATTG
TGCTTGAAAAAAGATCTACAGAAGAAGGCACAGAAGAGAATACAGCTGATGATAATGTTA
CCTGTATTGTACCTGATGGCGTGCCAATAGATATCACAGTGAAGCTGATGGTCTGCCTTG
TACATCTCAACATTCTTGAACCACTTAATCCTCTCTTGACAACACTAGTGGAACAGAATC
CTGAAGACATGGGAGACCTCTATCTAGATGTTGCTGAAGCTTTTCTGGATGTTGGTGAAT
ATAATTCTGCAC------------GTGCACTAGTCT------------------------
------------GGCATGCAGAAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               120-239, - strand, RNAz p=0.514351

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-239, - strand, RNAz p=0.514351

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

Help | Less info


               
               80-248, gnl|bosTau2|chr2 (53591994-53591826)
               

               
               80-248, gnl|canFam2|chr37 (9383262-9383437)
               

               
               80-248, gnl|danRer3|chrNA (203304507-203304682)
               

               
               80-248, gnl|dasNov1|scaffold_8294 (56878-57053)
               

               
               80-248, gnl|fr1|chrUn (220986009-220985839)
               

               
               80-248, gnl|galGal2|chr7 (10847664-10847838)
               

               
               80-248, gnl|hg17|chr2 (197479425-197479600)
               

               
               80-248, gnl|Hg17|chr2 (197479601-197479433)
               

               
               80-248, gnl|loxAfr1|scaffold_11613 (36446-36272)
               

               
               80-248, gnl|mm7|chr1 (54660089-54660264)
               

               
               80-248, gnl|Mm7|chr1 (54660265-54660097)
               

               
               80-248, gnl|monDom2|scaffold_2 (106453131-106453306)
               

               
               80-248, gnl|panTro1|chr13 (87420539-87420714)
               

               
               80-248, gnl|rheMac2|chr12 (60416480-60416655)
               

               
               80-248, gnl|rn3|chr9 (53208800-53208975)
               

               
               80-248, gnl|tetNig1|chr3 (2914916-2915084)
               

               
               80-248, gnl|xenTro1|scaffold_1061 (333136-332964)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               80-248, gnl|bosTau2|chr2 (53591994-53591826)
               

               
               80-248, gnl|canFam2|chr37 (9383262-9383437)
               

               
               80-248, gnl|danRer3|chrNA (203304507-203304682)
               

               
               80-248, gnl|dasNov1|scaffold_8294 (56878-57053)
               

               
               80-248, gnl|fr1|chrUn (220986009-220985839)
               

               
               80-248, gnl|galGal2|chr7 (10847664-10847838)
               

               
               80-248, gnl|hg17|chr2 (197479425-197479600)
               

               
               80-248, gnl|Hg17|chr2 (197479601-197479433)
               

               
               80-248, gnl|loxAfr1|scaffold_11613 (36446-36272)
               

               
               80-248, gnl|mm7|chr1 (54660089-54660264)
               

               
               80-248, gnl|Mm7|chr1 (54660265-54660097)
               

               
               80-248, gnl|monDom2|scaffold_2 (106453131-106453306)
               

               
               80-248, gnl|panTro1|chr13 (87420539-87420714)
               

               
               80-248, gnl|rheMac2|chr12 (60416480-60416655)
               

               
               80-248, gnl|rn3|chr9 (53208800-53208975)
               

               
               80-248, gnl|tetNig1|chr3 (2914916-2915084)
               

               
               80-248, gnl|xenTro1|scaffold_1061 (333136-332964)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ret (0.128733)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.128733)

	80-248, gnl\|bosTau2\|chr2 (53591994-53591826)
	80-248, gnl\|canFam2\|chr37 (9383262-9383437)
	80-248, gnl\|danRer3\|chrNA (203304507-203304682)
	80-248, gnl\|dasNov1\|scaffold_8294 (56878-57053)
	80-248, gnl\|fr1\|chrUn (220986009-220985839)
	80-248, gnl\|galGal2\|chr7 (10847664-10847838)
	80-248, gnl\|hg17\|chr2 (197479425-197479600)
	80-248, gnl\|Hg17\|chr2 (197479601-197479433)
	80-248, gnl\|loxAfr1\|scaffold_11613 (36446-36272)
	80-248, gnl\|mm7\|chr1 (54660089-54660264)
	80-248, gnl\|Mm7\|chr1 (54660265-54660097)
	80-248, gnl\|monDom2\|scaffold_2 (106453131-106453306)
	80-248, gnl\|panTro1\|chr13 (87420539-87420714)
	80-248, gnl\|rheMac2\|chr12 (60416480-60416655)
	80-248, gnl\|rn3\|chr9 (53208800-53208975)
	80-248, gnl\|tetNig1\|chr3 (2914916-2915084)
	80-248, gnl\|xenTro1\|scaffold_1061 (333136-332964)