Non-Coding RNA Search

Ss1.1-unkn-AR074G10iTHYCG10R.5

Sequence:


               
               GCCTGTTTGTTTTTGTTCTGGTTAAAATCTCATAAAAATACATTCAACCCTCGTGCCGAA
TTCGGCACGAGGCACTGTTCTCCA------------TGTTCTTTTCTATAGATAGGTTCA
TTTGTGTCGTCTATTAGGTTCCAGGTATAAGTGATATCATATGGTATTTGTCTTCCTCCT
TCCACTTACTTCCCTTAGAATGAGTGTCTCTAGTTCCATTTATGTTTCTTCAAATGGCAT
TATTTTGTTCTTTTTTATGGCTGAGTAGTATTCCATTCGTGTATATGTACTGCATCTTCT
TAACACATTCACATGTTGATGGACATTTAGGTTGTTTCCCTATCTTGGCTATTGGGCAAC
ACTGATACATTAATGAACTTGCTCAAAGTATAGCTTTTATAACTAATAGGTATAAAGGTT
GGGAATTGGAATCTTGGAATTGGATTCTAAAGCCCTTGCTTTTGATCACAATATGTTGGT
TAAATAAAGTATCCCTTATACACATGATAGAATATTATTTTTGTATTAAGAAGAATAAAT
TAGGATGATGCAAAAAAATAATATATATGGATGTATGGCTGTGTTGCTTTGCTGTGCATC
AGAGATGGACAGAATATTGTGAATCAACTATAATAAATTTTAAAAGGAGTAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTGTTTGTTTTTGTTCTGGTTAAAATCTCATAAAAATACATTCAACCCTCGTGCCGAA
TTCGGCACGAGGCACTGTTCTCCA------------TGTTCTTTTCTATAGATAGGTTCA
TTTGTGTCGTCTATTAGGTTCCAGGTATAAGTGATATCATATGGTATTTGTCTTCCTCCT
TCCACTTACTTCCCTTAGAATGAGTGTCTCTAGTTCCATTTATGTTTCTTCAAATGGCAT
TATTTTGTTCTTTTTTATGGCTGAGTAGTATTCCATTCGTGTATATGTACTGCATCTTCT
TAACACATTCACATGTTGATGGACATTTAGGTTGTTTCCCTATCTTGGCTATTGGGCAAC
ACTGATACATTAATGAACTTGCTCAAAGTATAGCTTTTATAACTAATAGGTATAAAGGTT
GGGAATTGGAATCTTGGAATTGGATTCTAAAGCCCTTGCTTTTGATCACAATATGTTGGT
TAAATAAAGTATCCCTTATACACATGATAGAATATTATTTTTGTATTAAGAAGAATAAAT
TAGGATGATGCAAAAAAATAATATATATGGATGTATGGCTGTGTTGCTTTGCTGTGCATC
AGAGATGGACAGAATATTGTGAATCAACTATAATAAATTTTAAAAGGAGTAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|56487240|emb|CAI00878.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|56487240|emb|CAI00878.1|

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               13-391, gnl|bosTau2|chr6 (50043143-50042769)
               


               
               70-390, gnl|bosTau2|chr22 (41365863-41365549)
               


               
               73-385, gnl|bosTau2|chr18 (7050857-7050544)
               


               
               75-366, gnl|bosTau2|chr11 (10800802-10800517)
               


               
               78-361, gnl|bosTau2|chr10 (28569973-28569688)
               


               
               87-357, gnl|bosTau2|chr10 (49846670-49846405)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-391, gnl|bosTau2|chr6 (50043143-50042769)
               


               
               70-390, gnl|bosTau2|chr22 (41365863-41365549)
               


               
               73-385, gnl|bosTau2|chr18 (7050857-7050544)
               


               
               75-366, gnl|bosTau2|chr11 (10800802-10800517)
               


               
               78-361, gnl|bosTau2|chr10 (28569973-28569688)
               


               
               87-357, gnl|bosTau2|chr10 (49846670-49846405)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               bfe (0.149858)
               

               
               ova (0.129132)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.149858)
               

               
               ova (0.129132)
               

               
               cty (0.10408)

	13-391, gnl\|bosTau2\|chr6 (50043143-50042769)

	70-390, gnl\|bosTau2\|chr22 (41365863-41365549)

	73-385, gnl\|bosTau2\|chr18 (7050857-7050544)

	75-366, gnl\|bosTau2\|chr11 (10800802-10800517)

	78-361, gnl\|bosTau2\|chr10 (28569973-28569688)

	87-357, gnl\|bosTau2\|chr10 (49846670-49846405)