Ss1.1-unkn-AR080F04THYCF04S.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATTGCTTCTGCCCCCCTCCTAAAGTGGATGCACATGAGAAATTATGCATACACTCTTTT CAGTCTTACATGGATTTTTAAGGTGGATGATGTGTCAGACCGTGTAAGGGAATCGCCTGG AGATGGGGGTTCTGAACTGTTAATGGGGACATGGGACTCCCGTTGCCTCTGATCACTTGT GTGGATTTTCCTGGCATCGAAAGACAGAAGCCGCTCATAAGTCACCAAGACCGACAGCAG GAATTCTGCGTGAAAGGGCATCAAACCTTGTTATTTTAATTTGCATCTGGGAGAATGTCT GAGCCAGGAGACCTGAGTCAGGCCATAGTGGAGGAAGGTGGGCCTGAGCAGGAGACAACC ACTCCAGAGAATGGTGTGGTTAAATCCGAAAGTCTGGATGAGGAAGAGAAGCTTGAACTA CAGAGGCGGCTGGCGGCTCAGAACCAAGAGAGAAGAAAATCCAAGTCAGGAGCAGGGAAA GGTAAACTAACTCGCAGCCTTGCTGTCTGTGAAGAGTCCTCAGCCAGACCAGGAGGGGAG AGTCTTCAGGATCAGGAATCAGTTCATTTACAGCTTTCCAGTTTTCCCAGCCTGCAAGAG GATGATAAATCTAGGAAAGATGACTCTGAAAGAGAAAAAGAAAAGGATAAAAACAAAGAT AAAACCTCTGAAAAACCCAAGATCAGAATGTTATCAAAAGATTGCAGCCAAGAATATACG GATTCTACAGGCATAGACTTACACGAGTTTCTGATTAACACATTAAAGAATAATTCCAGA GACAGGATGATACTCTTGAAAATGGAGCAGGAAATTATTGATTTCATTGGTGACAACAAT AATCACTATAAAAAGTTTCCTCAGATGTCCTCCTATCAGAGGATGCTTGTCCATCGTGTG GCAGCTTACTTTGGGTTGGATCACAACGTGGATCAGACAGGGAAATCTGTTATCATCAAC AAGACTGGCAACACAAGAATCCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATTGCTTCTGCCCCCCTCCTAAAGTGGATGCACATGAGAAATTATGCATACACTCTTTT CAGTCTTACATGGATTTTTAAGGTGGATGATGTGTCAGACCGTGTAAGGGAATCGCCTGG AGATGGGGGTTCTGAACTGTTAATGGGGACATGGGACTCCCGTTGCCTCTGATCACTTGT GTGGATTTTCCTGGCATCGAAAGACAGAAGCCGCTCATAAGTCACCAAGACCGACAGCAG GAATTCTGCGTGAAAGGGCATCAAACCTTGTTATTTTAATTTGCATCTGGGAGAATGTCT GAGCCAGGAGACCTGAGTCAGGCCATAGTGGAGGAAGGTGGGCCTGAGCAGGAGACAACC ACTCCAGAGAATGGTGTGGTTAAATCCGAAAGTCTGGATGAGGAAGAGAAGCTTGAACTA CAGAGGCGGCTGGCGGCTCAGAACCAAGAGAGAAGAAAATCCAAGTCAGGAGCAGGGAAA GGTAAACTAACTCGCAGCCTTGCTGTCTGTGAAGAGTCCTCAGCCAGACCAGGAGGGGAG AGTCTTCAGGATCAGGAATCAGTTCATTTACAGCTTTCCAGTTTTCCCAGCCTGCAAGAG GATGATAAATCTAGGAAAGATGACTCTGAAAGAGAAAAAGAAAAGGATAAAAACAAAGAT AAAACCTCTGAAAAACCCAAGATCAGAATGTTATCAAAAGATTGCAGCCAAGAATATACG GATTCTACAGGCATAGACTTACACGAGTTTCTGATTAACACATTAAAGAATAATTCCAGA GACAGGATGATACTCTTGAAAATGGAGCAGGAAATTATTGATTTCATTGGTGACAACAAT AATCACTATAAAAAGTTTCCTCAGATGTCCTCCTATCAGAGGATGCTTGTCCATCGTGTG GCAGCTTACTTTGGGTTGGATCACAACGTGGATCAGACAGGGAAATCTGTTATCATCAAC AAGACTGGCAACACAAGAATCCCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 583-700, - strand, RNAz p=0.932694 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 583-700, - strand, RNAz p=0.932694 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 255-423, gnl|bosTau2|chr22 (6811255-6811423) | |
| 255-423, gnl|canFam2|chr23 (8776670-8776869) | |
| 255-423, gnl|dasNov1|scaffold_2029 (93008-93207) | |
| 255-423, gnl|echTel1|scaffold_312175 (35976-35771) | |
| 255-423, gnl|hg17|chr3 (35698179-35698382) | |
| 255-423, gnl|Hg17|chr3 (35698208-35698376) | |
| 255-423, gnl|loxAfr1|scaffold_6801 (39370-39170) | |
| 255-423, gnl|mm7|chr9 (111884137-111883930) | |
| 255-423, gnl|Mm7|chr9 (111884092-111883930) | |
| 255-423, gnl|monDom2|scaffold_170 (498733-498528) | |
| 255-423, gnl|oryCun1|scaffold_209581 (52469-52270) | |
| 255-423, gnl|panTro1|chr2 (36715638-36715841) | |
| 255-423, gnl|rheMac2|chr2 (178090746-178090949) | |
| 255-423, gnl|rn3|chr8 (116812239-116812042) | |
| 255-423, gnl|xenTro1|scaffold_906 (372476-372651) | |
| 553-700, gnl|bosTau2|chr22 (6817433-6817580) | |
| 553-700, gnl|Hg17|chr3 (35704232-35704379) | |
| 553-700, gnl|Mm7|chr9 (111877496-111877349) | |
| 837-980, gnl|bosTau2|chr22 (6820552-6820695) | |
| 837-980, gnl|canFam2|chr23 (8785996-8786146) | |
| 837-980, gnl|danRer3|chrUn (78522492-78522610) | |
| 837-980, gnl|dasNov1|scaffold_2029 (101804-101954) | |
| 837-980, gnl|echTel1|scaffold_312175 (25539-25389) | |
| 837-980, gnl|fr1|chrUn (112887512-112887639) | |
| 837-980, gnl|galGal2|chr2 (44554120-44554264) | |
| 837-980, gnl|hg17|chr3 (35707314-35707464) | |
| 837-980, gnl|Hg17|chr3 (35707358-35707501) | |
| 837-980, gnl|loxAfr1|scaffold_8634 (35490-35626) | |
| 837-980, gnl|mm7|chr9 (111874602-111874455) | |
| 837-980, gnl|Mm7|chr9 (111874559-111874416) | |
| 837-980, gnl|monDom2|scaffold_170 (490583-490428) | |
| 837-980, gnl|oryCun1|scaffold_209581 (41714-41564) | |
| 837-980, gnl|panTro1|chr2 (36724793-36724943) | |
| 837-980, gnl|rheMac2|chr2 (178099845-178099995) | |
| 837-980, gnl|rn3|chr8 (116802998-116802848) | |
| 837-980, gnl|tetNig1|chr11 (2784940-2785065) | |
| 837-980, gnl|xenTro1|scaffold_540 (415267-415388) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 255-423, gnl|bosTau2|chr22 (6811255-6811423) | |
| 255-423, gnl|canFam2|chr23 (8776670-8776869) | |
| 255-423, gnl|dasNov1|scaffold_2029 (93008-93207) | |
| 255-423, gnl|echTel1|scaffold_312175 (35976-35771) | |
| 255-423, gnl|hg17|chr3 (35698179-35698382) | |
| 255-423, gnl|Hg17|chr3 (35698208-35698376) | |
| 255-423, gnl|loxAfr1|scaffold_6801 (39370-39170) | |
| 255-423, gnl|mm7|chr9 (111884137-111883930) | |
| 255-423, gnl|Mm7|chr9 (111884092-111883930) | |
| 255-423, gnl|monDom2|scaffold_170 (498733-498528) | |
| 255-423, gnl|oryCun1|scaffold_209581 (52469-52270) | |
| 255-423, gnl|panTro1|chr2 (36715638-36715841) | |
| 255-423, gnl|rheMac2|chr2 (178090746-178090949) | |
| 255-423, gnl|rn3|chr8 (116812239-116812042) | |
| 255-423, gnl|xenTro1|scaffold_906 (372476-372651) | |
| 553-700, gnl|bosTau2|chr22 (6817433-6817580) | |
| 553-700, gnl|Hg17|chr3 (35704232-35704379) | |
| 553-700, gnl|Mm7|chr9 (111877496-111877349) | |
| 837-980, gnl|bosTau2|chr22 (6820552-6820695) | |
| 837-980, gnl|canFam2|chr23 (8785996-8786146) | |
| 837-980, gnl|danRer3|chrUn (78522492-78522610) | |
| 837-980, gnl|dasNov1|scaffold_2029 (101804-101954) | |
| 837-980, gnl|echTel1|scaffold_312175 (25539-25389) | |
| 837-980, gnl|fr1|chrUn (112887512-112887639) | |
| 837-980, gnl|galGal2|chr2 (44554120-44554264) | |
| 837-980, gnl|hg17|chr3 (35707314-35707464) | |
| 837-980, gnl|Hg17|chr3 (35707358-35707501) | |
| 837-980, gnl|loxAfr1|scaffold_8634 (35490-35626) | |
| 837-980, gnl|mm7|chr9 (111874602-111874455) | |
| 837-980, gnl|Mm7|chr9 (111874559-111874416) | |
| 837-980, gnl|monDom2|scaffold_170 (490583-490428) | |
| 837-980, gnl|oryCun1|scaffold_209581 (41714-41564) | |
| 837-980, gnl|panTro1|chr2 (36724793-36724943) | |
| 837-980, gnl|rheMac2|chr2 (178099845-178099995) | |
| 837-980, gnl|rn3|chr8 (116802998-116802848) | |
| 837-980, gnl|tetNig1|chr11 (2784940-2785065) | |
| 837-980, gnl|xenTro1|scaffold_540 (415267-415388) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| isp (0.150376) |