Non-Coding RNA Search

Ss1.1-unkn-AR081B08BMBB08S.5.5

Sequence:


               
               GCGGACGCGTGG------------------------------------------------
------------------------GATGTATATTTTTAAAAGTTTTTATTATAGTGGGAA
AATATTCAATGTGTAATATGGGGTAAAAATGAGAAGTGACAAACTCATTTATATCATGTA
ATCCCATTTTATTTTTATACGTGTGTTTATGTGTATTGTATATAATATATGAAAGAAAAA
ATAAGAAAAGGAAAAACATAGAAAACTCTCTGTGTGTGATACGCACTTTCTTCCCACAGT
CCCGCACATGAGTAAGATTGTGCCATTTGGCTGGACTGTGGGTGAAGATACTCGGGACTT
GCCCCAGAATGTGGGCTCGAGTTGGCCACAGTTGACCTCGGACAAGCTCCTTGCCTTCCC
AGCCTCAGCTTCCAAATCTAAGAGGGAAACAGCAACGCCTCTCTCCCAGTCTCTTGTGAG
AATTCAGCGATCTTACGGATGTGAAAGTGACAGTAAGCCCTCTGCTGCTCCTTTTTCCTG
GACCCCAGCTCATTCTGTCTGAAGTTCAGAGTTTTCTCCACTAGATGGTGGTGGTAGAAA
AACAAAATGAATAAATCATACCAGCTTTTCTAACTAAATTTAAGCTTTCTTTTTAAGTCA
GCATGCACACCAACGTTTGGAAGGTTGCAGGAAACGAGAGCAACATAAAGCAGTAAACCC
TAGGCCTAAATTTCGCCTTCTCGTACCTCACTGCTGAATTGTTTTCACCTGCTTCGTGGT
TCACTTTGAACG------------TTGTCCTCCTGC------------GTGGGGATGATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGACGCGTGG------------------------------------------------
------------------------GATGTATATTTTTAAAAGTTTTTATTATAGTGGGAA
AATATTCAATGTGTAATATGGGGTAAAAATGAGAAGTGACAAACTCATTTATATCATGTA
ATCCCATTTTATTTTTATACGTGTGTTTATGTGTATTGTATATAATATATGAAAGAAAAA
ATAAGAAAAGGAAAAACATAGAAAACTCTCTGTGTGTGATACGCACTTTCTTCCCACAGT
CCCGCACATGAGTAAGATTGTGCCATTTGGCTGGACTGTGGGTGAAGATACTCGGGACTT
GCCCCAGAATGTGGGCTCGAGTTGGCCACAGTTGACCTCGGACAAGCTCCTTGCCTTCCC
AGCCTCAGCTTCCAAATCTAAGAGGGAAACAGCAACGCCTCTCTCCCAGTCTCTTGTGAG
AATTCAGCGATCTTACGGATGTGAAAGTGACAGTAAGCCCTCTGCTGCTCCTTTTTCCTG
GACCCCAGCTCATTCTGTCTGAAGTTCAGAGTTTTCTCCACTAGATGGTGGTGGTAGAAA
AACAAAATGAATAAATCATACCAGCTTTTCTAACTAAATTTAAGCTTTCTTTTTAAGTCA
GCATGCACACCAACGTTTGGAAGGTTGCAGGAAACGAGAGCAACATAAAGCAGTAAACCC
TAGGCCTAAATTTCGCCTTCTCGTACCTCACTGCTGAATTGTTTTCACCTGCTTCGTGGT
TCACTTTGAACG------------TTGTCCTCCTGC------------GTGGGGATGATG

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               14-437, gnl|bosTau2|chr23 (41284376-41284794)
               

               
               14-437, gnl|Hg17|chr6 (2707502-2706805)
               


               
               442-582, gnl|bosTau2|chr23 (41284819-41284959)
               

               
               442-582, gnl|Hg17|chr6 (2706780-2706617)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-437, gnl|bosTau2|chr23 (41284376-41284794)
               

               
               14-437, gnl|Hg17|chr6 (2707502-2706805)
               


               
               442-582, gnl|bosTau2|chr23 (41284819-41284959)
               

               
               442-582, gnl|Hg17|chr6 (2706780-2706617)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fty (0.17584)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               ecc (0.115035)

	14-437, gnl\|bosTau2\|chr23 (41284376-41284794)
	14-437, gnl\|Hg17\|chr6 (2707502-2706805)

	442-582, gnl\|bosTau2\|chr23 (41284819-41284959)
	442-582, gnl\|Hg17\|chr6 (2706780-2706617)