Non-Coding RNA Search

Ss1.1-unkn-AR082F10BMCF10S.5

Sequence:


               
               CTCCCTCCCTCCTCCTGTCCATAGTTATGATGGGCTCCCTCTTGGCTGCTACCACTGAGG
CCCCTGGCGAGTACTTCTTCTCTGATGGGATCCGACTAAAGAAATATCGTGGCATGGGTT
CTCTTGATGCCATGGACAAGCATCTCAGCAGCCAGAACCGATATTTCAGGTGGGACAGGC
AAGCCATTTACTGTATGCTAACTCTACATTGGCAGTATCATCAAGGCTCTGACCCTGTCT
GTGTTTCTTGCCTCTTCTTGCAGTGAAGCTGACAAAATCAAGGTGGCCCAGGGGGTGTCT
GGGGCTGTGCAGGACAAAGGATCCATCCACAAATTTGTTCCATACTTGATTGCCGGCATC
CAGCACTCCTGCCAGGACATTGGTGCTAAGAGTTTAACCCAAGTCCGGTAAGTTTAGGGA
GCAGGGCCATCGACTAGAGGGGCTGGACGAGGGCCAGCTCCCCACATCTGACCACCACCC
CTGTTCAGAGCCATGATGTATTCTGGGGAGCTCAAGTTTGAAAAGAGAACATCTTCAGCT
CAGGTTGAAGGTGGCGTCCACAGCCTTCATTCGTAAGTGACCAACCCTTTCCATTCCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCCTCCCTCCTCCTGTCCATAGTTATGATGGGCTCCCTCTTGGCTGCTACCACTGAGG
CCCCTGGCGAGTACTTCTTCTCTGATGGGATCCGACTAAAGAAATATCGTGGCATGGGTT
CTCTTGATGCCATGGACAAGCATCTCAGCAGCCAGAACCGATATTTCAGGTGGGACAGGC
AAGCCATTTACTGTATGCTAACTCTACATTGGCAGTATCATCAAGGCTCTGACCCTGTCT
GTGTTTCTTGCCTCTTCTTGCAGTGAAGCTGACAAAATCAAGGTGGCCCAGGGGGTGTCT
GGGGCTGTGCAGGACAAAGGATCCATCCACAAATTTGTTCCATACTTGATTGCCGGCATC
CAGCACTCCTGCCAGGACATTGGTGCTAAGAGTTTAACCCAAGTCCGGTAAGTTTAGGGA
GCAGGGCCATCGACTAGAGGGGCTGGACGAGGGCCAGCTCCCCACATCTGACCACCACCC
CTGTTCAGAGCCATGATGTATTCTGGGGAGCTCAAGTTTGAAAAGAGAACATCTTCAGCT
CAGGTTGAAGGTGGCGTCCACAGCCTTCATTCGTAAGTGACCAACCCTTTCCATTCCTCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5BLC8_BRARE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5BLC8_BRARE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               325-443, - strand, RNAz p=0.537008

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               325-443, - strand, RNAz p=0.537008

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               287-377, + strand, RNAmicro p=0.978282

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               287-377, + strand, RNAmicro p=0.978282

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               9-600, gnl|bosTau2|chr22 (40019881-40019290)
               

               
               9-600, gnl|Hg17|chr3 (49037493-49036920)
               

               
               9-600, gnl|Mm7|chr9 (108277517-108278092)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-600, gnl|bosTau2|chr22 (40019881-40019290)
               

               
               9-600, gnl|Hg17|chr3 (49037493-49036920)
               

               
               9-600, gnl|Mm7|chr9 (108277517-108278092)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               che (0.136314)
               

               
               cly (0.120642)
               

               
               nbm (0.0993246)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)
               

               
               cly (0.120642)
               

               
               nbm (0.0993246)

	9-600, gnl\|bosTau2\|chr22 (40019881-40019290)
	9-600, gnl\|Hg17\|chr3 (49037493-49036920)
	9-600, gnl\|Mm7\|chr9 (108277517-108278092)