Non-Coding RNA Search

Ss1.1-unkn-AR095C05SPCC05S.5

Sequence:


               
               CCCCCTTTGCCAGAAGCTCCGGAAGGACTCCCCAACCTGTCGCACCTGCCATCACCTGAA
CCGTACCATCCCCACTGGGCGCCCCCGCCCCTGGTCCCACTCCCACGGCCTGGCTCCACC
TTGGCCTTGGAGCCCAATGCCTTCTCTGCTCCCGCAGCCCCAGCAGTGTTCCCTTTTCAG
TGTCATGGAGCTGGCCCGCCTCAAGTCTTTCATTTTCCCAGGCTAGGTAGGGTCCTGAGG
AATGCATTCGGAGGATGCGGGAGTCCCTGAGAACCTGGAGGAGCAAAACTTAATCTGGGT
CCTTGGCCGGTCCCCTGTCCTCCTGGGCGATGGCGCTTAAGGGGGTAGTGGGGCAGAAGG
ACTGACGATCACCTGCTCTCCTAGACCTCTGGGGCTGGCTGGGCTGTGGTGACGCTGGGG
AAAGCTTCAGCTTGTCGACCCAGTCTGTGTCACAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCCTTTGCCAGAAGCTCCGGAAGGACTCCCCAACCTGTCGCACCTGCCATCACCTGAA
CCGTACCATCCCCACTGGGCGCCCCCGCCCCTGGTCCCACTCCCACGGCCTGGCTCCACC
TTGGCCTTGGAGCCCAATGCCTTCTCTGCTCCCGCAGCCCCAGCAGTGTTCCCTTTTCAG
TGTCATGGAGCTGGCCCGCCTCAAGTCTTTCATTTTCCCAGGCTAGGTAGGGTCCTGAGG
AATGCATTCGGAGGATGCGGGAGTCCCTGAGAACCTGGAGGAGCAAAACTTAATCTGGGT
CCTTGGCCGGTCCCCTGTCCTCCTGGGCGATGGCGCTTAAGGGGGTAGTGGGGCAGAAGG
ACTGACGATCACCTGCTCTCCTAGACCTCTGGGGCTGGCTGGGCTGTGGTGACGCTGGGG
AAAGCTTCAGCTTGTCGACCCAGTCTGTGTCACAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9CVK8_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9CVK8_MOUSE

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               41-160, - strand, RNAz p=0.684406
               

               
               281-381, + strand, RNAz p=0.505132

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-160, - strand, RNAz p=0.684406
               

               
               281-381, + strand, RNAz p=0.505132

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               316-381, + strand, RNAmicro p=0.962861

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               316-381, + strand, RNAmicro p=0.962861

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-456, gnl|bosTau2|chr2 (65115846-65115382)
               

               
               1-456, gnl|Hg17|chr2 (219863038-219862560)
               

               
               1-456, gnl|Mm7|chr1 (75360301-75359828)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-456, gnl|bosTau2|chr2 (65115846-65115382)
               

               
               1-456, gnl|Hg17|chr2 (219863038-219862560)
               

               
               1-456, gnl|Mm7|chr1 (75360301-75359828)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               csp (0.161186)
               

               
               hyp (0.142837)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)
               

               
               hyp (0.142837)

	41-160, - strand, RNAz p=0.684406
	281-381, + strand, RNAz p=0.505132

	1-456, gnl\|bosTau2\|chr2 (65115846-65115382)
	1-456, gnl\|Hg17\|chr2 (219863038-219862560)
	1-456, gnl\|Mm7\|chr1 (75360301-75359828)