Non-Coding RNA Search

Ss1.1-unkn-AR095C09SPCC09S.5

Sequence:


               
               GTGTGGACAGGCTGACGGCGTGGAGGGGTGCCCGTCCCAGGAGCTGTGTTTGGGCACCTC
TGTCTGTGTCTAGGGGGCGTGTGCGAGGGCCTCGCCCTCCTCCTCCTCCTCGCTGCCGTC
CACACTCGCCTGCCTCACCACCTTCTGGTGCCTGCGCACCGAGGCACAGCCAGCCTCGCC
CTGCTCCTGGAAGGCCTGGGTCCGGCTGGCCACGAGGGCAGCGCTGTTGAGGGCGACCAC
GGACTGGCGGGACCGCAGGGCCGGCCAGGACCCCTTGCGGACCCGTCTGCCTCCGGGGGC
CCCTGAGAGCTGAGAGAAGGGCTGTGGAGAGTCTTCATCCGAAGACTCTTTTGAAGAGAA
AACCTCTGGGAGGTCGCCGGCCCCTGAGGTGCCTTCCAGCTCCGAGGGGGGCTCCAGGAG
GCTGATGGACCTCATAACCCCACGGAGGTTGATTCGGGGCCGCGGCCCCGGCTCTTCCTT
TGGGGCTGCCTGGCTCTCTTCCGGCCCCACAACCTTCACCTCCCCACTGCCCTCTGGTTC
TGGCGGAAGAGGCGGGAGGGGTGTGGAGACCTCGGGGGCCAGCGGCTCCTCCGGGGAGGC
CCCGCCCGCTTTCTGCTCCCAGACATGGCTCTGCCGGCTGTGAGGAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGTGGACAGGCTGACGGCGTGGAGGGGTGCCCGTCCCAGGAGCTGTGTTTGGGCACCTC
TGTCTGTGTCTAGGGGGCGTGTGCGAGGGCCTCGCCCTCCTCCTCCTCCTCGCTGCCGTC
CACACTCGCCTGCCTCACCACCTTCTGGTGCCTGCGCACCGAGGCACAGCCAGCCTCGCC
CTGCTCCTGGAAGGCCTGGGTCCGGCTGGCCACGAGGGCAGCGCTGTTGAGGGCGACCAC
GGACTGGCGGGACCGCAGGGCCGGCCAGGACCCCTTGCGGACCCGTCTGCCTCCGGGGGC
CCCTGAGAGCTGAGAGAAGGGCTGTGGAGAGTCTTCATCCGAAGACTCTTTTGAAGAGAA
AACCTCTGGGAGGTCGCCGGCCCCTGAGGTGCCTTCCAGCTCCGAGGGGGGCTCCAGGAG
GCTGATGGACCTCATAACCCCACGGAGGTTGATTCGGGGCCGCGGCCCCGGCTCTTCCTT
TGGGGCTGCCTGGCTCTCTTCCGGCCCCACAACCTTCACCTCCCCACTGCCCTCTGGTTC
TGGCGGAAGAGGCGGGAGGGGTGTGGAGACCTCGGGGGCCAGCGGCTCCTCCGGGGAGGC
CCCGCCCGCTTTCTGCTCCCAGACATGGCTCTGCCGGCTGTGAGGAGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               230-349, - strand, RNAz p=0.809172

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               230-349, - strand, RNAz p=0.809172

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_018276, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_018276, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               23-365, gnl|bosTau2|chr29 (36308066-36308415)
               

               
               23-365, gnl|Hg17|chr11 (66835999-66835636)
               

               
               23-365, gnl|Mm7|chr19 (4157091-4157440)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               23-365, gnl|bosTau2|chr29 (36308066-36308415)
               

               
               23-365, gnl|Hg17|chr11 (66835999-66835636)
               

               
               23-365, gnl|Mm7|chr19 (4157091-4157440)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	23-365, gnl\|bosTau2\|chr29 (36308066-36308415)
	23-365, gnl\|Hg17\|chr11 (66835999-66835636)
	23-365, gnl\|Mm7\|chr19 (4157091-4157440)