Ss1.1-unkn-AU055673.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACGTCATTGTGGTGGACTGGCTGTCTCGGGCCCAGCAGCATTATCCAATATCTGCGGGAT ACACCAAGCTGGTGGGACAGGATGTGGCCACGTTTATCGACTGGATGGCGGATGAATTTA ACTATCCTCCGAACAATGTCCACCTCCTGGGATACAGCCTTGGAGCCCACGCTGCTGGCA TTGCAGGAAGTCTGACCAAGAAGAAGGTCAATAGAATTACTGGCCTAGATCCAGCTGGAC CTAACTTCGAGTATGCAGAAGCTCCAAGCCGCCTTTCTCCCGACGACGCAGATTTCGTAG ACGGCTTACACACATTCACCAGAGGGTCACCTGGCCGAAGTATTGGCATCCAGAAACCAG TAGGGCATGTTGACATTTATCCCAATGGAGGCACTTTCCAACCAGGGTGTAACATTGGGG AAGCCATCCGTGTGATTGCAGAGAGAGGCCTTGGAGATGTGGACCAGCTCGTGAAGTGCT CCCATGAGCGCTCCATCCATCTCTTCATCGACTCTCTGTTGAATGAAGAAAATCCTAGTA AGGCCTACCGGTGCAATTCAAAGGAAGCCTTTGAGAAAGGGCTCTGCCTGAGTTGCAGAA AGAACCGTTGCAACAACTTGGGCTATGAGATCAATAAGGTCAGAGCCAAAAGAAGCAGCA AAATGTACCTGAAGACTCGTGCTCAGATGCCCTACAAAGTCTTCCATTACCAAGTAAAGA TGCGTTTTTCTGGGACTGAGAGTGATACCCACACCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACGTCATTGTGGTGGACTGGCTGTCTCGGGCCCAGCAGCATTATCCAATATCTGCGGGAT ACACCAAGCTGGTGGGACAGGATGTGGCCACGTTTATCGACTGGATGGCGGATGAATTTA ACTATCCTCCGAACAATGTCCACCTCCTGGGATACAGCCTTGGAGCCCACGCTGCTGGCA TTGCAGGAAGTCTGACCAAGAAGAAGGTCAATAGAATTACTGGCCTAGATCCAGCTGGAC CTAACTTCGAGTATGCAGAAGCTCCAAGCCGCCTTTCTCCCGACGACGCAGATTTCGTAG ACGGCTTACACACATTCACCAGAGGGTCACCTGGCCGAAGTATTGGCATCCAGAAACCAG TAGGGCATGTTGACATTTATCCCAATGGAGGCACTTTCCAACCAGGGTGTAACATTGGGG AAGCCATCCGTGTGATTGCAGAGAGAGGCCTTGGAGATGTGGACCAGCTCGTGAAGTGCT CCCATGAGCGCTCCATCCATCTCTTCATCGACTCTCTGTTGAATGAAGAAAATCCTAGTA AGGCCTACCGGTGCAATTCAAAGGAAGCCTTTGAGAAAGGGCTCTGCCTGAGTTGCAGAA AGAACCGTTGCAACAACTTGGGCTATGAGATCAATAAGGTCAGAGCCAAAAGAAGCAGCA AAATGTACCTGAAGACTCGTGCTCAGATGCCCTACAAAGTCTTCCATTACCAAGTAAAGA TGCGTTTTTCTGGGACTGAGAGTGATACCCACACCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1-111, + strand, RNAz p=0.509012 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-111, + strand, RNAz p=0.509012 |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 1-111, gnl|bosTau2|chr8 (35879439-35879549) | |
| 1-111, gnl|canFam2|chr25 (40084018-40083828) | |
| 1-111, gnl|danRer3|chr22 (15231053-15230863) | |
| 1-111, gnl|dasNov1|scaffold_14450 (40585-40394) | |
| 1-111, gnl|echTel1|scaffold_289928 (38991-38800) | |
| 1-111, gnl|fr1|chrUn (161807746-161807932) | |
| 1-111, gnl|galGal2|chrZ (26342851-26342667) | |
| 1-111, gnl|hg17|chr8 (19853552-19853742) | |
| 1-111, gnl|Hg17|chr8 (19853630-19853740) | |
| 1-111, gnl|loxAfr1|scaffold_182219 (813-622) | |
| 1-111, gnl|mm7|chr8 (67347345-67347535) | |
| 1-111, gnl|Mm7|chr8 (67347423-67347533) | |
| 1-111, gnl|monDom2|scaffold_1 (76723039-76722849) | |
| 1-111, gnl|oryCun1|scaffold_214778 (50059-49869) | |
| 1-111, gnl|panTro1|chr7 (20725269-20725459) | |
| 1-111, gnl|rheMac2|chr8 (19850664-19850854) | |
| 1-111, gnl|rn3|chr16 (22546088-22545898) | |
| 1-111, gnl|tetNig1|chr1 (10590508-10590692) | |
| 1-111, gnl|xenTro1|scaffold_267 (1405023-1405207) | |
| 222-456, gnl|bosTau2|chr8 (35882502-35882736) | |
| 222-456, gnl|canFam2|chr25 (40081636-40081427) | |
| 222-456, gnl|danRer3|chr22 (15229233-15229024) | |
| 222-456, gnl|dasNov1|scaffold_14450 (38355-38146) | |
| 222-456, gnl|echTel1|scaffold_289928 (36157-35940) | |
| 222-456, gnl|fr1|chrUn (161808856-161809064) | |
| 222-456, gnl|galGal2|chrZ (26339986-26339777) | |
| 222-456, gnl|hg17|chr8 (19855895-19856104) | |
| 222-456, gnl|Hg17|chr8 (19855910-19856144) | |
| 222-456, gnl|loxAfr1|scaffold_25358 (520-312) | |
| 222-456, gnl|mm7|chr8 (67350404-67350613) | |
| 222-456, gnl|Mm7|chr8 (67350419-67350653) | |
| 222-456, gnl|monDom2|scaffold_1 (76720551-76720343) | |
| 222-456, gnl|oryCun1|scaffold_214778 (47820-47611) | |
| 222-456, gnl|panTro1|chr7 (20727617-20727826) | |
| 222-456, gnl|rheMac2|chr8 (19852987-19853195) | |
| 222-456, gnl|rn3|chr16 (22542785-22542576) | |
| 222-456, gnl|tetNig1|chr1 (10591567-10591775) | |
| 222-456, gnl|xenTro1|scaffold_267 (1407543-1407751) | |
| 472-699, gnl|bosTau2|chr24 (39321099-39320872) | |
| 472-699, gnl|canFam2|chr7 (82257856-82257614) | |
| 472-699, gnl|danRer3|chrUn (4472971-4473213) | |
| 472-699, gnl|dasNov1|scaffold_119782 (3262-3504) | |
| 472-699, gnl|echTel1|scaffold_311972 (19425-19183) | |
| 472-699, gnl|fr1|chrUn (304166348-304166590) | |
| 472-699, gnl|galGal2|chrUn (4522513-4522755) | |
| 472-699, gnl|hg17|chr18 (45361787-45362029) | |
| 472-699, gnl|Hg17|chr18 (45361798-45362025) | |
| 472-699, gnl|loxAfr1|scaffold_23995 (4549-4307) | |
| 472-699, gnl|mm7|chr18 (75343513-75343271) | |
| 472-699, gnl|Mm7|chr18 (75343500-75343273) | |
| 472-699, gnl|monDom2|scaffold_58 (9583047-9583289) | |
| 472-699, gnl|oryCun1|scaffold_214778 (46235-45993) | |
| 472-699, gnl|panTro1|chr17 (41838057-41838299) | |
| 472-699, gnl|rheMac2|chr18 (42619485-42619727) | |
| 472-699, gnl|rn3|chr18 (71874875-71874633) | |
| 472-699, gnl|tetNig1|chr12 (5717028-5717270) | |
| 472-699, gnl|xenTro1|scaffold_731 (542284-542526) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-111, gnl|bosTau2|chr8 (35879439-35879549) | |
| 1-111, gnl|canFam2|chr25 (40084018-40083828) | |
| 1-111, gnl|danRer3|chr22 (15231053-15230863) | |
| 1-111, gnl|dasNov1|scaffold_14450 (40585-40394) | |
| 1-111, gnl|echTel1|scaffold_289928 (38991-38800) | |
| 1-111, gnl|fr1|chrUn (161807746-161807932) | |
| 1-111, gnl|galGal2|chrZ (26342851-26342667) | |
| 1-111, gnl|hg17|chr8 (19853552-19853742) | |
| 1-111, gnl|Hg17|chr8 (19853630-19853740) | |
| 1-111, gnl|loxAfr1|scaffold_182219 (813-622) | |
| 1-111, gnl|mm7|chr8 (67347345-67347535) | |
| 1-111, gnl|Mm7|chr8 (67347423-67347533) | |
| 1-111, gnl|monDom2|scaffold_1 (76723039-76722849) | |
| 1-111, gnl|oryCun1|scaffold_214778 (50059-49869) | |
| 1-111, gnl|panTro1|chr7 (20725269-20725459) | |
| 1-111, gnl|rheMac2|chr8 (19850664-19850854) | |
| 1-111, gnl|rn3|chr16 (22546088-22545898) | |
| 1-111, gnl|tetNig1|chr1 (10590508-10590692) | |
| 1-111, gnl|xenTro1|scaffold_267 (1405023-1405207) | |
| 222-456, gnl|bosTau2|chr8 (35882502-35882736) | |
| 222-456, gnl|canFam2|chr25 (40081636-40081427) | |
| 222-456, gnl|danRer3|chr22 (15229233-15229024) | |
| 222-456, gnl|dasNov1|scaffold_14450 (38355-38146) | |
| 222-456, gnl|echTel1|scaffold_289928 (36157-35940) | |
| 222-456, gnl|fr1|chrUn (161808856-161809064) | |
| 222-456, gnl|galGal2|chrZ (26339986-26339777) | |
| 222-456, gnl|hg17|chr8 (19855895-19856104) | |
| 222-456, gnl|Hg17|chr8 (19855910-19856144) | |
| 222-456, gnl|loxAfr1|scaffold_25358 (520-312) | |
| 222-456, gnl|mm7|chr8 (67350404-67350613) | |
| 222-456, gnl|Mm7|chr8 (67350419-67350653) | |
| 222-456, gnl|monDom2|scaffold_1 (76720551-76720343) | |
| 222-456, gnl|oryCun1|scaffold_214778 (47820-47611) | |
| 222-456, gnl|panTro1|chr7 (20727617-20727826) | |
| 222-456, gnl|rheMac2|chr8 (19852987-19853195) | |
| 222-456, gnl|rn3|chr16 (22542785-22542576) | |
| 222-456, gnl|tetNig1|chr1 (10591567-10591775) | |
| 222-456, gnl|xenTro1|scaffold_267 (1407543-1407751) | |
| 472-699, gnl|bosTau2|chr24 (39321099-39320872) | |
| 472-699, gnl|canFam2|chr7 (82257856-82257614) | |
| 472-699, gnl|danRer3|chrUn (4472971-4473213) | |
| 472-699, gnl|dasNov1|scaffold_119782 (3262-3504) | |
| 472-699, gnl|echTel1|scaffold_311972 (19425-19183) | |
| 472-699, gnl|fr1|chrUn (304166348-304166590) | |
| 472-699, gnl|galGal2|chrUn (4522513-4522755) | |
| 472-699, gnl|hg17|chr18 (45361787-45362029) | |
| 472-699, gnl|Hg17|chr18 (45361798-45362025) | |
| 472-699, gnl|loxAfr1|scaffold_23995 (4549-4307) | |
| 472-699, gnl|mm7|chr18 (75343513-75343271) | |
| 472-699, gnl|Mm7|chr18 (75343500-75343273) | |
| 472-699, gnl|monDom2|scaffold_58 (9583047-9583289) | |
| 472-699, gnl|oryCun1|scaffold_214778 (46235-45993) | |
| 472-699, gnl|panTro1|chr17 (41838057-41838299) | |
| 472-699, gnl|rheMac2|chr18 (42619485-42619727) | |
| 472-699, gnl|rn3|chr18 (71874875-71874633) | |
| 472-699, gnl|tetNig1|chr12 (5717028-5717270) | |
| 472-699, gnl|xenTro1|scaffold_731 (542284-542526) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ese (0.126502) | |
| jca (0.11396) |